Class Bio::RestrictionEnzyme::DoubleStranded::CutLocations
In: lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
Parent: Array

Contains an Array of CutLocationPair objects.

Methods

Public Class methods

CutLocations constructor.

Contains an Array of CutLocationPair objects.

Example:

  clp1 = CutLocationPair.new(3,2)
  clp2 = CutLocationPair.new(7,9)
  pairs = CutLocations.new(clp1, clp2)

Arguments

Returns:nothing

[Source]

    # File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 33
33:   def initialize(*args)
34:     validate_args(args)
35:     super(args)
36:   end

Public Instance methods

Returns an Array of locations of cuts on the complementary strand


Arguments

  • none
Returns:Array of locations of cuts on the complementary strand

[Source]

    # File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 54
54:   def complement
55:     self.collect {|a| a[1]}
56:   end

Returns an Array of locations of cuts on the primary strand


Arguments

  • none
Returns:Array of locations of cuts on the primary strand

[Source]

    # File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 44
44:   def primary
45:     self.collect {|a| a[0]}
46:   end

Protected Instance methods

[Source]

    # File lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb, line 62
62:   def validate_args(args)
63:     args.each do |a|
64:       unless a.class == Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
65:         err = "Not a CutLocationPair\n"
66:         err += "class: #{a.class}\n"
67:         err += "inspect: #{a.inspect}"
68:         raise ArgumentError, err
69:       end
70:     end
71:   end

[Validate]