#include <gnFilter.h>
Inheritance diagram for gnFilter::
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Definition at line 42 of file gnFilter.h. |
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Definition at line 76 of file gnFilter.cpp. Referenced by Clone(), DNAComplementFilter(), DNAtoRNAFilter(), RNAComplementFilter(), RNAtoDNAFilter(), alphabetCharacterFilter(), basicDNASeqFilter(), basicRNASeqFilter(), fullDNASeqFilter(), fullRNASeqFilter(), numberCharacterFilter(), and proteinSeqFilter().
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Creates a gnFilter for a predefined filter type. Used by the static sequence constructors to avoid the "static initialization order fiasco"
Definition at line 100 of file gnFilter.cpp. |
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Definition at line 83 of file gnFilter.cpp. |
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Definition at line 91 of file gnFilter.cpp. |
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Definition at line 141 of file gnFilter.cpp. |
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Reimplemented from gnBaseFilter. Definition at line 131 of file gnFilter.h. |
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Definition at line 223 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 318 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 374 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 500 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 428 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 336 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 390 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 255 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 271 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 538 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 464 of file gnFilter.cpp. Referenced by gnFilter().
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Definition at line 64 of file gnFilter.cpp. Referenced by gnContigSpec::SeqRead().
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Definition at line 54 of file gnFilter.cpp. |
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Filters the given string.
Reimplemented from gnBaseFilter. Definition at line 187 of file gnFilter.cpp. |
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Filter the given character array.
Reimplemented from gnBaseFilter. Definition at line 146 of file gnFilter.cpp. |
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Filter the given character.
Reimplemented from gnBaseFilter. Definition at line 148 of file gnFilter.h. |
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Definition at line 193 of file gnFilter.h. |
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Definition at line 198 of file gnFilter.h. |
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Definition at line 175 of file gnFilter.h. |
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IsValid() scans the supplied character array for invalid characters.
Definition at line 155 of file gnFilter.h. |
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Definition at line 138 of file gnFilter.h. Referenced by Filter(), and IsValid().
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Definition at line 180 of file gnFilter.h. |
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Definition at line 165 of file gnFilter.h. |
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Definition at line 143 of file gnFilter.h. Referenced by MakeValid().
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Definition at line 69 of file gnFilter.cpp. |
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Definition at line 59 of file gnFilter.cpp. |
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Definition at line 215 of file gnFilter.h. |
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Definition at line 222 of file gnFilter.h. |
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Definition at line 195 of file gnFilter.cpp. |
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Definition at line 158 of file gnFilter.cpp. Referenced by gnContigSpec::SeqRead().
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Definition at line 187 of file gnFilter.h. Referenced by CreateAlphabetCharacterFilter(), CreateBasicDNAFilter(), CreateBasicRNAFilter(), CreateDNAComplementFilter(), CreateDNAtoRNAFilter(), CreateFullDNAFilter(), CreateFullRNAFilter(), CreateNumberCharacterFilter(), CreateProteinFilter(), CreateRNAComplementFilter(), and CreateRNAtoDNAFilter().
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Definition at line 209 of file gnFilter.h. Referenced by CreateAlphabetCharacterFilter(), CreateDNAComplementFilter(), CreateDNAtoRNAFilter(), CreateRNAComplementFilter(), and CreateRNAtoDNAFilter().
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Definition at line 204 of file gnFilter.h. Referenced by CreateBasicDNAFilter(), CreateBasicRNAFilter(), CreateDNAComplementFilter(), CreateDNAtoRNAFilter(), CreateFullDNAFilter(), CreateFullRNAFilter(), CreateNumberCharacterFilter(), CreateProteinFilter(), CreateRNAComplementFilter(), and CreateRNAtoDNAFilter().
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Definition at line 18 of file gnFilter.cpp. |
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Definition at line 34 of file gnFilter.cpp. |
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Definition at line 44 of file gnFilter.cpp. |
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Definition at line 39 of file gnFilter.cpp. Referenced by gnABISource::gnABISource(), gnDNXSource::gnDNXSource(), gnFASSource::gnFASSource(), gnGBKSource::gnGBKSource(), and gnSEQSource::gnSEQSource().
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Definition at line 49 of file gnFilter.cpp. |
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Definition at line 23 of file gnFilter.cpp. |
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Definition at line 29 of file gnFilter.cpp. |
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Definition at line 125 of file gnFilter.h. |
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Reimplemented from gnBaseFilter. Definition at line 122 of file gnFilter.h. |
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Definition at line 124 of file gnFilter.h. |
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Definition at line 126 of file gnFilter.h. |