Bio.Sequence

Data structures etc (Bio.Sequence.SeqData)

data Sequence t
data Unknown
type Offset
type SeqData
type Qual
type QualData

Accessor functions

Converting to and from String.

Nucleotide functionality.

data Nuc

Protein sequence functionality

data Amino

File formats

The Fasta file format (Bio.Sequence.Fasta)

Quality data

The FastQ format (Bio.Sequence.FastQ)

The phd file format (Bio.Sequence.Phd)

TwoBit file format support (Bio.Seqeunce.TwoBit)

Hashing functionality (Bio.Sequence.HashWord)

data HashF k

Entropy calculations

class KWords s