! | Bio.Sequence.SeqData |
? | Bio.Sequence.SeqData |
Ala | Bio.Sequence.SeqData |
Amino | Bio.Sequence.SeqData |
appendHeader | Bio.Sequence.SeqData |
Arg | Bio.Sequence.SeqData |
Asn | Bio.Sequence.SeqData |
Asp | Bio.Sequence.SeqData |
Asx | Bio.Sequence.SeqData |
b36 | Bio.Sequence.SFF_name |
bases | Bio.Sequence.SFF |
baseToFlowPos | Bio.Sequence.SFF |
castSeq | Bio.Sequence.SeqData |
castToAmino | Bio.Sequence.SeqData |
castToNuc | Bio.Sequence.SeqData |
clip_adapter_left | Bio.Sequence.SFF |
clip_adapter_right | Bio.Sequence.SFF |
clip_qual_left | Bio.Sequence.SFF |
clip_qual_right | Bio.Sequence.SFF |
CommonHeader | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
compl | Bio.Sequence.SeqData |
convert | Bio.Sequence.SFF |
cumulative_index | Bio.Sequence.SFF |
Cys | Bio.Sequence.SeqData |
date | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
decCh | Bio.Sequence.SFF_name |
decode36 | Bio.Sequence.SFF_name |
decodeDate | Bio.Sequence.SFF_name |
decodeLocation | Bio.Sequence.SFF_name |
decodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
defragSeq | Bio.Sequence.SeqData |
divMods | Bio.Sequence.SFF_name |
encode36 | Bio.Sequence.SFF_name |
encodeDate | Bio.Sequence.SFF_name |
encodeLocation | Bio.Sequence.SFF_name |
encodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
encodeRegion | Bio.Sequence.SFF_name |
Flow | Bio.Sequence.SFF |
flow | Bio.Sequence.SFF |
flowgram | Bio.Sequence.SFF |
flowgram_fmt | Bio.Sequence.SFF |
flowToBasePos | Bio.Sequence.SFF |
flow_data | Bio.Sequence.SFF |
flow_index | Bio.Sequence.SFF |
flow_length | Bio.Sequence.SFF |
fromIUPAC | Bio.Sequence.SeqData |
fromStr | Bio.Sequence.SeqData |
Gln | Bio.Sequence.SeqData |
Glu | Bio.Sequence.SeqData |
Glx | Bio.Sequence.SeqData |
Gly | Bio.Sequence.SeqData |
hasqual | Bio.Sequence.SeqData |
His | Bio.Sequence.SeqData |
Ile | Bio.Sequence.SeqData |
Index | Bio.Sequence.SFF |
index_length | Bio.Sequence.SFF |
index_offset | Bio.Sequence.SFF |
key | Bio.Sequence.SFF |
key_length | Bio.Sequence.SFF |
Leu | Bio.Sequence.SeqData |
Lys | Bio.Sequence.SeqData |
main | Main |
masked_bases | Bio.Sequence.SFF |
Met | Bio.Sequence.SeqData |
name_length | Bio.Sequence.SFF |
Nuc | Bio.Sequence.SeqData |
num_bases | Bio.Sequence.SFF |
num_reads | Bio.Sequence.SFF |
Offset | Bio.Sequence.SeqData |
packFlows | Bio.Sequence.SFF |
Phe | Bio.Sequence.SeqData |
Pro | Bio.Sequence.SeqData |
putSeqLn | Bio.Sequence.SeqData |
Qual | Bio.Sequence.SeqData, Bio.Sequence.SFF |
QualData | Bio.Sequence.SeqData, Bio.Sequence.SFF |
quality | Bio.Sequence.SFF |
rbToSequence | Bio.Sequence.SFF |
ReadBlock | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
ReadHeader | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
ReadName | |
1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
readSFF | Bio.Sequence.SFF |
read_header | Bio.Sequence.SFF |
read_name | Bio.Sequence.SFF |
recoverSFF | Bio.Sequence.SFF |
region | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
revcompl | Bio.Sequence.SeqData |
revcompl' | Bio.Sequence.SeqData |
Seq | Bio.Sequence.SeqData |
SeqData | Bio.Sequence.SeqData, Bio.Sequence.SFF |
seqdata | Bio.Sequence.SeqData |
seqheader | Bio.Sequence.SeqData |
seqlabel | Bio.Sequence.SeqData |
seqlength | Bio.Sequence.SeqData |
seqmap | Bio.Sequence.SeqData |
seqqual | Bio.Sequence.SeqData |
seqToStr | Bio.Sequence.SeqData |
Sequence | Bio.Sequence.SeqData |
Ser | Bio.Sequence.SeqData |
setHeader | Bio.Sequence.SeqData |
SFF | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
sffToSequence | Bio.Sequence.SFF |
STP | Bio.Sequence.SeqData |
test | Bio.Sequence.SFF |
Thr | Bio.Sequence.SeqData |
time | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
toIUPAC | Bio.Sequence.SeqData |
toStr | Bio.Sequence.SeqData |
translate | Bio.Sequence.SeqData |
trim | Bio.Sequence.SFF |
trimFlows | Bio.Sequence.SFF |
trimFromTo | Bio.Sequence.SFF |
trimKey | Bio.Sequence.SFF |
Trp | Bio.Sequence.SeqData |
Tyr | Bio.Sequence.SeqData |
Unknown | Bio.Sequence.SeqData |
unpackFlows | Bio.Sequence.SFF |
Val | Bio.Sequence.SeqData |
writeSFF | Bio.Sequence.SFF |
writeSFF' | Bio.Sequence.SFF |
Xaa | Bio.Sequence.SeqData |
Xle | Bio.Sequence.SeqData |
x_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
y_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF |