org.biojava.bio.structure.io
Interface StructureIOFile

All Superinterfaces:
StructureIO
All Known Implementing Classes:
PDBFileReader

public interface StructureIOFile
extends StructureIO

interface StructureIOFile extends the StructureIO interface and adds a few File specific methods.

Author:
Andreas Prlic

Method Summary
 void addExtension(java.lang.String ext)
          add a known File extension.
 Structure getStructure(java.lang.String filename)
          open filename and returns a Structure object.
 void setPath(java.lang.String path)
          set path to file / connection string to db.
 
Methods inherited from interface org.biojava.bio.structure.io.StructureIO
getStructureById
 

Method Detail

setPath

void setPath(java.lang.String path)
set path to file / connection string to db.

Parameters:
path - a String specifying the path value

addExtension

void addExtension(java.lang.String ext)
add a known File extension.

Parameters:
ext - a String ...

getStructure

Structure getStructure(java.lang.String filename)
                       throws java.io.IOException
open filename and returns a Structure object.

Parameters:
filename - a String
Returns:
a Structure object
Throws:
java.io.IOException - ...