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java.lang.Objectorg.biojava.bio.seq.impl.SimpleSequenceFactory
public class SimpleSequenceFactory
A no-frills implementation of SequenceFactory that produces SimpleSequence objects.
Constructor Summary | |
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SimpleSequenceFactory()
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Method Summary | |
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Sequence |
createSequence(SymbolList symList,
java.lang.String uri,
java.lang.String name,
Annotation annotation)
Creates a sequence using these parameters. |
FeatureRealizer |
getFeatureRealizer()
Returns the FeatureRealizer set by "setFeatureRealizer". |
void |
setFeatureRealizer(FeatureRealizer fr)
Set the FeatureRealizer used by new sequences created by this factory. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SimpleSequenceFactory()
Method Detail |
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public FeatureRealizer getFeatureRealizer()
public void setFeatureRealizer(FeatureRealizer fr)
public Sequence createSequence(SymbolList symList, java.lang.String uri, java.lang.String name, Annotation annotation)
SequenceFactory
createSequence
in interface SequenceFactory
symList
- the SymbolList defining the 'sequence'uri
- the uri of the sequence. This will be returned
by the getURN() method on Sequence.name
- the nameannotation
- a hint for the annotation of the resulting sequence
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