org.biojava.bio.seq
Class FeatureFilter.OverlapsLocation
java.lang.Object
org.biojava.bio.seq.FeatureFilter.OverlapsLocation
- All Implemented Interfaces:
- java.io.Serializable, FeatureFilter, OptimizableFilter
- Enclosing interface:
- FeatureFilter
public static final class FeatureFilter.OverlapsLocation
- extends java.lang.Object
- implements OptimizableFilter
A filter that returns all features overlapping a location.
- Since:
- 1.0
- Author:
- Matthew Pocock
- See Also:
- Serialized Form
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter |
FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter |
Method Summary |
boolean |
accept(Feature f)
Returns true if the feature overlaps this filter's location. |
boolean |
equals(java.lang.Object o)
|
Location |
getLocation()
|
int |
hashCode()
|
boolean |
isDisjoint(FeatureFilter filt)
Returns true if this filter is disjoint from filt - that is, there is no
Feature that is accepted by both filters. |
boolean |
isProperSubset(FeatureFilter sup)
Returns true if this filter is a proper subset of sup - that is, for every
feature that matches this, it also matches sup. |
java.lang.String |
toString()
|
Methods inherited from class java.lang.Object |
clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
FeatureFilter.OverlapsLocation
public FeatureFilter.OverlapsLocation(Location loc)
- Creates a filter that returns everything overlapping loc.
- Parameters:
loc
- the location that will overlap the accepted features
getLocation
public Location getLocation()
accept
public boolean accept(Feature f)
- Returns true if the feature overlaps this filter's location.
- Specified by:
accept
in interface FeatureFilter
- Parameters:
f
- the Feature to evaluate
- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
equals
public boolean equals(java.lang.Object o)
- Overrides:
equals
in class java.lang.Object
hashCode
public int hashCode()
- Overrides:
hashCode
in class java.lang.Object
isProperSubset
public boolean isProperSubset(FeatureFilter sup)
- Description copied from interface:
OptimizableFilter
- Returns true if this filter is a proper subset of sup - that is, for every
feature that matches this, it also matches sup. The empty filter is a
proper subset of all filters. All filters are a proper subset of the all
filter. All filters are proper subsets of themselves.
- Specified by:
isProperSubset
in interface OptimizableFilter
- Parameters:
sup
- the potential super set
- Returns:
- true if sup contains all features contained by this filter
isDisjoint
public boolean isDisjoint(FeatureFilter filt)
- Description copied from interface:
OptimizableFilter
- Returns true if this filter is disjoint from filt - that is, there is no
Feature that is accepted by both filters. The empty filter is disjoint from
all other filters. The all filter is disjoint from none.
- Specified by:
isDisjoint
in interface OptimizableFilter
toString
public java.lang.String toString()
- Overrides:
toString
in class java.lang.Object