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java.lang.Objectorg.biojava.utils.ProcessTools
public class ProcessTools
Convenience methods for running external processes. This class
offers wrappers around the java.lang.Process
API,
but hides away the details of managing threads and process I/O.
StringWriter out = new StringWriter(); ProcessTools.exec( new String[] {"/usr/bin/wc", "-w"}, "The quick brown fox jumps over the lazy dog", out, null ); int numWords = Integer.parseInt(out.toString().trim());
Method Summary | |
---|---|
static int |
exec(java.lang.String[] args,
java.io.Reader input,
java.io.Writer stdout,
java.io.Writer stderr)
Deprecated. Execute the specified command and wait for it to return. |
static int |
exec(java.lang.String[] args,
java.lang.String[] envp,
java.io.File dir,
java.io.Reader input,
java.io.Writer stdout,
java.io.Writer stderr,
long timeout)
Deprecated. Execute the specified command and wait for it to return, or kill it if the specified timeout expires first. |
static int |
exec(java.lang.String command,
java.io.Reader input,
java.io.Writer stdout,
java.io.Writer stderr)
Deprecated. Execute the specified command and wait for it to return. |
static int |
exec(java.lang.String command,
java.lang.String[] envp,
java.io.File dir,
java.io.Reader input,
java.io.Writer stdout,
java.io.Writer stderr,
long timeout)
Deprecated. Execute the specified command and wait for it to return. |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Method Detail |
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public static int exec(java.lang.String[] args, java.io.Reader input, java.io.Writer stdout, java.io.Writer stderr) throws java.io.IOException
args
- the command line to execute.input
- data to present to the process' standard input, or null
if the process does not require input.stdout
- a Writer
which will be filled with data from the process' output stream, or null
to ignore output.stderr
- a Writer
which will be filled with data from the process' error stream, or null
to ignore output.
java.io.IOException
public static int exec(java.lang.String[] args, java.lang.String[] envp, java.io.File dir, java.io.Reader input, java.io.Writer stdout, java.io.Writer stderr, long timeout) throws java.io.IOException, ProcessTimeoutException
args
- the command line to execute.envp
- environment variables for the child process, or null
to inherit the current set.dir
- working directory for the child process, or null
to inherit the current directory.input
- data to present to the process' standard input, or null
if the process does not require input.stdout
- a Writer
which will be filled with data from the process' output stream, or null
to ignore output.stderr
- a Writer
which will be filled with data from the process' error stream, or null
to ignore output.timeout
- maximum run-time (in milliseconds) for the child process. A value of 0 indicates no limit.
java.io.IOException
- if an error occurs while starting or communicating with the process
ProcessTimeoutException
- if the child process was killed because its timeout had expired.public static int exec(java.lang.String command, java.io.Reader input, java.io.Writer stdout, java.io.Writer stderr) throws java.io.IOException
command
- the command line to execute.input
- data to present to the process' standard input, or
null
if the process does not require input.stdout
- a Writer
which will be filled with data
from the process' output stream, or null
to ignore output.stderr
- a Writer
which will be filled with data
from the process' error stream, or null
to ignore output.
java.io.IOException
- if an error occurs while starting or communicating
with the processpublic static int exec(java.lang.String command, java.lang.String[] envp, java.io.File dir, java.io.Reader input, java.io.Writer stdout, java.io.Writer stderr, long timeout) throws java.io.IOException, ProcessTimeoutException
command
- the command line to execute.input
- data to present to the process' standard input, or
null
if the process does not require input.stdout
- a Writer
which will be filled with data
from the process' output stream, or null
to ignore output.stderr
- a Writer
which will be filled with data
from the process' error stream, or null
to ignore output.timeout
- maximum run-time (in milliseconds) for the child process. A value of 0 indicates no limit.
java.io.IOException
- if an error occurs while starting or communicating
with the process
ProcessTimeoutException
- if the child process was killed because its timeout had expired.
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