Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement
org.biojava.bio.alignment Classes to generate and describe sequence alignments. 
 

Uses of AlignmentElement in org.biojava.bio.alignment
 

Classes in org.biojava.bio.alignment that implement AlignmentElement
 class SimpleAlignmentElement
          SimpleSimpleAlignment is a simple implementation of AlignmentElement.
 

Methods in org.biojava.bio.alignment that return AlignmentElement
protected  AlignmentElement FlexibleAlignment.getAE(java.lang.Object label)
           
 

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement
 void FlexibleAlignment.addSequence(AlignmentElement ae)
          add a new a alignment usings a location to the reference sequence.
 void ARAlignment.addSequence(AlignmentElement ae)