Uses of Class
org.biojava.utils.Unchangeable

Packages that use Unchangeable
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
org.biojava.bio.program.das Development client for the Distributed Annotation System. 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.seq.db.biofetch Client for the OBDA BioFetch protocol. 
org.biojava.bio.seq.db.flat Support for OBDA flatfile databases. 
org.biojava.bio.seq.homol The classes and interfaces for defining sequence similarity and honology. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
org.biojava.bio.seq.io Classes and interfaces for processing and producing flat-file representations of sequences. 
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
org.biojava.ontology A general-purpose API for ontologies. 
org.biojavax The Biojava extensions packages, classes that extend the core biojava functionality 
org.biojavax.bio.seq Rich implementations of Sequences, Locations and Features. 
 

Uses of Unchangeable in org.biojava.bio.dist
 

Subclasses of Unchangeable in org.biojava.bio.dist
 class GapDistribution
          This distribution emits gap symbols.
 

Uses of Unchangeable in org.biojava.bio.dp
 

Subclasses of Unchangeable in org.biojava.bio.dp
 class SimpleStatePath
          A no-frills implementation of StatePath.
 

Uses of Unchangeable in org.biojava.bio.program.das
 

Subclasses of Unchangeable in org.biojava.bio.program.das
 class DASSequenceDB
           Collection of sequences retrieved from the DAS network.
 

Uses of Unchangeable in org.biojava.bio.seq
 

Subclasses of Unchangeable in org.biojava.bio.seq
 class CircularView
           A circular view onto another Sequence object.
static class FeatureHolder.EmptyFeatureHolder
           
 

Uses of Unchangeable in org.biojava.bio.seq.db.biofetch
 

Subclasses of Unchangeable in org.biojava.bio.seq.db.biofetch
 class BioFetchSequenceDB
          Simple SequenceDB implementation backed by a BioFetch (HTTP) server.
 

Uses of Unchangeable in org.biojava.bio.seq.db.flat
 

Subclasses of Unchangeable in org.biojava.bio.seq.db.flat
 class FlatSequenceDB
          FlatSequenceDB is an OBDA flatfile sequence databank implementation.
 

Uses of Unchangeable in org.biojava.bio.seq.homol
 

Subclasses of Unchangeable in org.biojava.bio.seq.homol
static class SimilarityPairFeature.EmptyPairwiseAlignment
          EmptyPairwiseAlignment empty pairwise alignment which has labels to empty symbol lists.
 

Uses of Unchangeable in org.biojava.bio.seq.impl
 

Subclasses of Unchangeable in org.biojava.bio.seq.impl
 class ViewSequence
          A view onto another Sequence object.
 

Uses of Unchangeable in org.biojava.bio.seq.io
 

Subclasses of Unchangeable in org.biojava.bio.seq.io
 class CharacterTokenization
          Implementation of SymbolTokenization which binds symbols to single unicode characters.
 class CrossProductTokenization
          Tokenization for cross-product alphabets.
 class DoubleTokenization
           
 class IntegerTokenization
           
 class NameTokenization
          Simple implementation of SymbolTokenization which uses the `name' field of the symbols.
 class SubIntegerTokenization
           
 class WordTokenization
          Base class for tokenizations which accept whitespace-separated `words'.
 

Uses of Unchangeable in org.biojava.bio.symbol
 

Subclasses of Unchangeable in org.biojava.bio.symbol
 class DoubleAlphabet
           An efficient implementation of an Alphabet over the infinite set of double values.
static class DoubleAlphabet.DoubleRange
          A range of double values.
static class DoubleAlphabet.DoubleSymbol
          A single double value.
static class DoubleAlphabet.SubDoubleAlphabet
          A class to represent a contiguous range of double symbols.
 class IntegerAlphabet
           An efficient implementation of an Alphabet over the infinite set of integer values.
static class IntegerAlphabet.IntegerSymbol
          A single int value.
 class RelabeledAlignment
          An alignment that relabels another alignment.
 class SoftMaskedAlphabet
          Soft masking is usually displayed by making the masked regions somehow different from the non masked regions.
 class SoftMaskedAlphabet.CaseSensitiveTokenization
          This SymbolTokenizer works with a delegate to softmask symbol tokenization as appropriate.
 

Uses of Unchangeable in org.biojava.ontology
 

Subclasses of Unchangeable in org.biojava.ontology
 class IntegerOntology
           
 class IntegerOntology.IntTerm
           
static class Triple.Impl
          Basic in-memory implementation of a Triple in an ontology
 

Uses of Unchangeable in org.biojavax
 

Subclasses of Unchangeable in org.biojavax
 class EmptyRichAnnotation
          A place holder for a RichAnnotation that prevents null having to be used
 class SimpleCrossRef
          A basic CrossRef implementation.
 class SimpleDocRefAuthor
          Represents an author of a documentary reference.
 

Uses of Unchangeable in org.biojavax.bio.seq
 

Subclasses of Unchangeable in org.biojavax.bio.seq
 class EmptyRichLocation
          An Empty implementation of RichLocation.