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Packages that use JointFragments | |
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org.biojava.bio.structure.align.pairwise | Classes for the pairwise alignment of structures. |
Uses of JointFragments in org.biojava.bio.structure.align.pairwise |
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Methods in org.biojava.bio.structure.align.pairwise that return JointFragments | |
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JointFragments[] |
FragmentJoiner.approach_ap3(Atom[] ca1,
Atom[] ca2,
FragmentPair[] fraglst,
StrucAligParameters params)
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JointFragments[] |
FragmentJoiner.frag_pairwise_compat(FragmentPair[] fraglst,
int angleDiff,
float fragCompatDist,
int maxRefine)
Calculate the pairwise compatibility of fpairs. |
Methods in org.biojava.bio.structure.align.pairwise with parameters of type JointFragments | |
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void |
AlternativeAlignment.apairs_from_idxlst(JointFragments jf)
Set apairs according to a list of (i,j) tuples. |
static double |
FragmentJoiner.getRMS(Atom[] ca1,
Atom[] ca2,
JointFragments frag)
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