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Packages that use AbstractSymbolList | |
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org.biojava.bio.alignment | Classes to generate and describe sequence alignments. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of AbstractSymbolList in org.biojava.bio.alignment |
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Subclasses of AbstractSymbolList in org.biojava.bio.alignment | |
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class |
AbstractULAlignment
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class |
AbstractULAlignment.SubULAlignment
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class |
FlexibleAlignment
FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment. |
Uses of AbstractSymbolList in org.biojava.bio.seq.impl |
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Subclasses of AbstractSymbolList in org.biojava.bio.seq.impl | |
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class |
AssembledSymbolList
Support class for applications which need to patch together sections of sequence into a single SymbolList. |
class |
NewAssembledSymbolList
Support class for applications which need to patch together sections of sequence into a single SymbolList. |
class |
SimpleGappedSequence
Simple implementation of GappedSequence. |
Uses of AbstractSymbolList in org.biojava.bio.symbol |
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Subclasses of AbstractSymbolList in org.biojava.bio.symbol | |
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class |
ChunkedSymbolList
SymbolList implementation using constant-size chunks. |
class |
DummySymbolList
Symbol list which just consists of non-informative symbols. |
class |
PackedSymbolList
A SymbolList that stores symbols as bit-patterns in an array of longs. |
class |
SimpleAlignment
A simple implementation of an Alignment. |
class |
SimpleGappedSymbolList
This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps. |
class |
SimpleSymbolList
Basic implementation of SymbolList. |
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