Uses of Interface
org.biojavax.bio.seq.io.RichSequenceFormat

Packages that use RichSequenceFormat
org.biojavax.bio.seq.io Classes to support the I/O of RichSequence and Bioentry objects. 
 

Uses of RichSequenceFormat in org.biojavax.bio.seq.io
 

Classes in org.biojavax.bio.seq.io that implement RichSequenceFormat
 class EMBLFormat
          Format reader for EMBL files.
 class EMBLxmlFormat
          Format reader for EMBLxml files.
 class FastaFormat
          Format object representing FASTA files.
 class GenbankFormat
          Format reader for GenBank files.
 class INSDseqFormat
          Format reader for INSDseq files.
static class RichSequenceFormat.BasicFormat
          Provides a basic format with simple things like line-widths precoded.
static class RichSequenceFormat.HeaderlessFormat
          Provides the basic implementation required for simple header/footer-less files such as Genbank.
 class UniProtFormat
          Format reader for UniProt files.
 class UniProtXMLFormat
          Format reader for UniProtXML files.
 

Constructors in org.biojavax.bio.seq.io with parameters of type RichSequenceFormat
RichStreamReader(java.io.BufferedReader reader, RichSequenceFormat format, SymbolTokenization symParser, RichSequenceBuilderFactory sf, Namespace ns)
          Creates a new stream reader on the given reader, which will attempt to read sequences in the given format, having symbols from the given tokenization, and pass them to the given factory to be transformed into RichSequence objects in the given namespace.
RichStreamReader(java.io.InputStream is, RichSequenceFormat format, SymbolTokenization symParser, RichSequenceBuilderFactory sf, Namespace ns)
          Creates a new stream reader on the given input stream, which will attempt to read sequences in the given format, having symbols from the given tokenization, and pass them to the given factory to be transformed into RichSequence objects in the given namespace.
RichStreamWriter(java.io.OutputStream os, RichSequenceFormat format)
          Generate a new RichStreamWriter to the stream os and using format.