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Packages that use org.biojava.bio.dist | |
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org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.gui | Graphical interfaces for biojava objects. |
org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package. |
org.biojava.bio.program.phred | Parser for Phred output |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
org.biojavax.ga.functions | GA functions |
org.biojavax.ga.util | Utility functions and helper classes |
Classes in org.biojava.bio.dist used by org.biojava.bio.dist | |
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AbstractDistribution
An abstract implementation of Distribution. |
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Count
An encapsulation of a count over the Symbols within an alphabet. |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
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DistributionFactory
A thing that can make Distributions. |
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DistributionTrainer
An object that can be used to train a distribution up. |
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DistributionTrainerContext
A context within a group of DistributionTrainers can be trained together. |
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IgnoreCountsTrainer
A distribution trainer that just ignores all counts. |
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OrderNDistribution
Provides an N'th order distribution. |
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SimpleDistribution
A simple implementation of a distribution, which works with any finite alphabet. |
Classes in org.biojava.bio.dist used by org.biojava.bio.dp | |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
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DistributionFactory
A thing that can make Distributions. |
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DistributionTrainerContext
A context within a group of DistributionTrainers can be trained together. |
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SimpleDistributionTrainerContext
A no-frills implementation of DistributionTrainerContext. |
Classes in org.biojava.bio.dist used by org.biojava.bio.gui | |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
Classes in org.biojava.bio.dist used by org.biojava.bio.program.hmmer | |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
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DistributionFactory
A thing that can make Distributions. |
Classes in org.biojava.bio.dist used by org.biojava.bio.program.phred | |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
Classes in org.biojava.bio.dist used by org.biojava.bio.seq | |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
Classes in org.biojava.bio.dist used by org.biojava.bio.symbol | |
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Distribution
An encapsulation of a probability distribution over the Symbols within an alphabet. |
Classes in org.biojava.bio.dist used by org.biojavax.ga.functions | |
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OrderNDistribution
Provides an N'th order distribution. |
Classes in org.biojava.bio.dist used by org.biojavax.ga.util | |
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OrderNDistribution
Provides an N'th order distribution. |
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