|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.biojava.bio.program.ssaha.SearchListener.Wrapper
org.biojava.bio.program.ssaha.SearchListener.FilterByLength
public static final class SearchListener.FilterByLength
A simple listener that filters out all hits that are too short.
Nested Class Summary |
---|
Nested classes/interfaces inherited from interface org.biojava.bio.program.ssaha.SearchListener |
---|
SearchListener.Echo, SearchListener.FilterByLength, SearchListener.Tee, SearchListener.Wrapper |
Constructor Summary | |
---|---|
SearchListener.FilterByLength(SearchListener delegate,
int minLength)
|
Method Summary | |
---|---|
void |
hit(int hitID,
int queryOffset,
int hitOffset,
int hitLength)
There has been a hit between the query sequence and a database sequence. |
Methods inherited from class org.biojava.bio.program.ssaha.SearchListener.Wrapper |
---|
endSearch, startSearch |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
---|
public SearchListener.FilterByLength(SearchListener delegate, int minLength)
Method Detail |
---|
public void hit(int hitID, int queryOffset, int hitOffset, int hitLength)
SearchListener
hit
in interface SearchListener
hit
in class SearchListener.Wrapper
hitID
- the number of the sequence hit; resolvable by
String id = DataStore.seqNameForID(hitID)queryOffset
- the offset into the query sequencehitOffset
- the offset into the sequence hit in the databasehitLength
- the number of symbols hit
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |