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public interface RichSequenceDB
A database of RichSequences with accessible keys and iterators over all sequences.
This may have several implementations with rich behaviour, but basically most of the time you will just use the interface methods to do stuff. A sequence database contains a finite number of sequences stored under unique keys.
Field Summary |
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Fields inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
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SEQUENCES |
Fields inherited from interface org.biojavax.bio.db.BioEntryDBLite |
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BIOENTRYS |
Fields inherited from interface org.biojavax.bio.db.BioEntryDBLite |
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BIOENTRYS |
Fields inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
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SEQUENCES |
Method Summary | |
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RichSequenceIterator |
getRichSequenceIterator()
Returns a RichSequenceIterator over all sequences in the database. |
SequenceIterator |
sequenceIterator()
Returns a SequenceIterator over all sequences in the database. Will always return an instance of RichSequenceIterator. |
Methods inherited from interface org.biojava.bio.seq.db.SequenceDB |
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filter, ids |
Methods inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
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addSequence, getName, getSequence, removeSequence |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from interface org.biojavax.bio.db.BioEntryDB |
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getBioEntryIterator, ids |
Methods inherited from interface org.biojavax.bio.db.BioEntryDBLite |
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addBioEntry, getBioEntry, getBioEntrys, getBioEntrys, getName, removeBioEntry |
Methods inherited from interface org.biojavax.bio.db.RichSequenceDBLite |
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addRichSequence, getRichSequence, getRichSequences, getRichSequences, removeRichSequence |
Methods inherited from interface org.biojavax.bio.db.BioEntryDBLite |
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addBioEntry, getBioEntry, getBioEntrys, getBioEntrys, getName, removeBioEntry |
Methods inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
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addSequence, getName, getSequence, removeSequence |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Method Detail |
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SequenceIterator sequenceIterator()
sequenceIterator
in interface SequenceDB
RichSequenceIterator getRichSequenceIterator()
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