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Packages that use StAXFeatureHandler | |
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org.biojava.bio.seq.io.agave | Classes for converting between AGAVE XML and BioJava objects. |
Uses of StAXFeatureHandler in org.biojava.bio.seq.io.agave |
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Subclasses of StAXFeatureHandler in org.biojava.bio.seq.io.agave | |
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class |
AGAVEAssemblyHandler
|
class |
AGAVEBioSeqHandler
Handles the AGAVE <bio_sequence> element |
class |
AGAVEBioSequenceHandler
Handles the AGAVE <bio_sequence> element |
class |
AGAVECdsHandler
Handles the AGAVE <cds> element |
class |
AGAVEChromosomeHandler
Handles the AGAVE <chromosome> element |
class |
AGAVEClassificationHandler
|
class |
AGAVECompResultHandler
|
class |
AGAVEComputationHandler
|
class |
AGAVEContigHandler
Handles the AGAVE <contig> element |
class |
AGAVEEvidenceHandler
|
class |
AGAVEFragmentOrderHandler
|
class |
AGAVEFragmentOrientationHandler
|
class |
AGAVEGeneHandler
|
class |
AGAVEHandler
Handles the root AGAVE element modified for agave format |
class |
AGAVEMrnaHandler
Handles the AGAVE <mrna> element |
class |
AGAVEPredictedProteinHandler
Handles the AGAVE <predicted_protein> element |
class |
AGAVEQueryRegionPropHandler
|
class |
AGAVEResultGroupHandler
|
class |
AGAVESeqFeatureHandler
seq_feature |
class |
AGAVESeqMapHandler
sequence_map |
class |
AGAVETranscriptHandler
transcript |
class |
AGAVEUnorderedFragmentsHandler
unordered_fragments |
Fields in org.biojava.bio.seq.io.agave declared as StAXFeatureHandler | |
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protected StAXFeatureHandler |
StAXFeatureHandler.staxenv
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protected StAXFeatureHandler |
StAXPropertyHandler.staxenv
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Methods in org.biojava.bio.seq.io.agave with parameters of type StAXFeatureHandler | |
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StAXContentHandler |
StAXHandlerFactory.getHandler(StAXFeatureHandler staxenv)
Return a suitable StAX content handler. |
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