Uses of Interface
org.biojava.bio.symbol.CodonPref

Packages that use CodonPref
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of CodonPref in org.biojava.bio.symbol
 

Classes in org.biojava.bio.symbol that implement CodonPref
 class SimpleCodonPref
          a simple no-frills implementation of the CodonPref object that encapsulates codon preference data.
 

Methods in org.biojava.bio.symbol that return CodonPref
 CodonPref CodonPrefFilter.ByName.getCodonPref()
           
static CodonPref CodonPrefTools.getCodonPreference(java.lang.String id)
          get the specified codon preference.
static CodonPref[] CodonPrefTools.readFromXML(java.io.InputStream prefStream)
           
static CodonPref CodonPrefTools.readFromXML(java.io.InputStream prefStream, java.lang.String name)
          reads a specified CodonPref from an file.
 

Methods in org.biojava.bio.symbol with parameters of type CodonPref
 void CodonPrefFilter.put(CodonPref codonPref)
          handles storage of a CodonPref object
 void CodonPrefFilter.AcceptAll.put(CodonPref codonPref)
           
 void CodonPrefFilter.ByName.put(CodonPref codonPref)
           
 void CodonPrefFilter.EverythingToXML.put(CodonPref codonPref)
           
static void CodonPrefTools.writeToXML(CodonPref codonPref, java.io.PrintWriter writer)
          write out a specified CodonPref object in XML format.