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Packages that use SimilarityType | |
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org.biojava.bio.program.homologene | Support classes for Homologene data. |
Uses of SimilarityType in org.biojava.bio.program.homologene |
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Classes in org.biojava.bio.program.homologene that implement SimilarityType | |
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static class |
SimilarityType.PlaceHolder
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Fields in org.biojava.bio.program.homologene declared as SimilarityType | |
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static SimilarityType |
SimilarityType.CURATED
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static SimilarityType |
SimilarityType.MULTIPLE
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static SimilarityType |
SimilarityType.TWIN
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Methods in org.biojava.bio.program.homologene that return SimilarityType | |
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SimilarityType |
OrthoPair.getSimilarity()
gets the second orthologue in the orthology relationship. |
SimilarityType |
SimpleOrthoPair.getSimilarity()
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Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType | |
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OrthoPair |
SimpleHomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
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OrthoPair |
HomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
Create a computed orthology entry. |
Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType | |
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OrthoPairFilter.BySimilarityType(SimilarityType type)
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SimpleOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
constructor for the computed form of an orthology relationship. |
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