org.biojava.bio.symbol
Class SimpleGappedSymbolList.Block
java.lang.Object
org.biojava.bio.symbol.SimpleGappedSymbolList.Block
- All Implemented Interfaces:
- java.io.Serializable
- Enclosing class:
- SimpleGappedSymbolList
protected static final class SimpleGappedSymbolList.Block
- extends java.lang.Object
- implements java.io.Serializable
An aligned block.
The alignment is actualy stoored as a list of these objects. Each block is
contiguous with the next in the source fields, but may be gapped in the
view fields.
- Author:
- Matthew Pocock
- See Also:
- Serialized Form
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
sourceStart
public int sourceStart
sourceEnd
public int sourceEnd
viewStart
public int viewStart
viewEnd
public int viewEnd
SimpleGappedSymbolList.Block
public SimpleGappedSymbolList.Block(int sourceStart,
int sourceEnd,
int viewStart,
int viewEnd)
SimpleGappedSymbolList.Block
public SimpleGappedSymbolList.Block(SimpleGappedSymbolList.Block block)
toString
public java.lang.String toString()
- Overrides:
toString
in class java.lang.Object
isSane
public boolean isSane()