org.biojava.bio.program.das.dasstructure
Class DASStructureCall

java.lang.Object
  extended by org.biojava.bio.program.das.dasstructure.DASStructureCall

public class DASStructureCall
extends java.lang.Object

Calls a DAS - Structure server.

Since:
1.4
Version:
%I% %G%
Author:
Andreas Prlic

Constructor Summary
DASStructureCall()
          Constructs a DASStructureCall object.
DASStructureCall(java.lang.String url)
          Constructs a DASStructureCall object.
 
Method Summary
 java.lang.String getServerurl()
          get url of structure service.
 Structure getStructure(java.lang.String pdb_code)
          connect to a DAS structure service and retreive 3D data.
protected  java.lang.String getTimeStamp()
          Returns a time stamp .
 void setServerurl(java.lang.String s)
          set url of structure service.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DASStructureCall

public DASStructureCall()
Constructs a DASStructureCall object.


DASStructureCall

public DASStructureCall(java.lang.String url)
Constructs a DASStructureCall object.

Parameters:
url - a String ...
Method Detail

getTimeStamp

protected java.lang.String getTimeStamp()
Returns a time stamp .

Returns:
a String representing the current system time

setServerurl

public void setServerurl(java.lang.String s)
set url of structure service.

Parameters:
s - a String specifying the serverurl value
See Also:
getServerurl()

getServerurl

public java.lang.String getServerurl()
get url of structure service.

Returns:
a Structure object
Throws:
java.io.IOException - ...
See Also:
setServerurl(java.lang.String)

getStructure

public Structure getStructure(java.lang.String pdb_code)
                       throws java.io.IOException
connect to a DAS structure service and retreive 3D data. return a biojava Structure object

Parameters:
pdb_code - a String
Returns:
a Structure object
Throws:
java.io.IOException - ...