Uses of Interface
org.biojava.bio.seq.RealizingFeatureHolder

Packages that use RealizingFeatureHolder
org.biojava.bio.program.phred Parser for Phred output 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
 

Uses of RealizingFeatureHolder in org.biojava.bio.program.phred
 

Classes in org.biojava.bio.program.phred that implement RealizingFeatureHolder
 class PhredSequence
          PhredSequence is an extension of SimpleSequence that implements Qualitative to hold Phred quality scores.
 

Uses of RealizingFeatureHolder in org.biojava.bio.seq
 

Classes in org.biojava.bio.seq that implement RealizingFeatureHolder
 class CircularView
           A circular view onto another Sequence object.
 class NewSimpleAssembly
          A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects.
 class SimpleAssembly
          A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects.
 

Uses of RealizingFeatureHolder in org.biojava.bio.seq.impl
 

Classes in org.biojava.bio.seq.impl that implement RealizingFeatureHolder
 class RevCompSequence
          A reverse complement view onto Sequence interface.
 class SimpleFeature
          A no-frills implementation of a feature.
 class SimpleFramedFeature
          Title: SimpleFramedFeature.
 class SimpleHomologyFeature
           
 class SimpleRemoteFeature
          A no-frills implementation of a remote feature.
 class SimpleRestrictionSite
          SimpleRestrictionSite represents the recognition site of a restriction enzyme.
 class SimpleSequence
          A basic implementation of the Sequence interface.
 class SimpleSimilarityPairFeature
          SimpleSimilarityPairFeature represents a similarity between a query sequence and a subject sequence as produced by a search program.
 class SimpleStrandedFeature
          A no-frills implementation of StrandedFeature.
 class ViewSequence
          A view onto another Sequence object.