Uses of Class
org.biojava.bio.symbol.AbstractSymbolList

Packages that use AbstractSymbolList
org.biojava.bio.alignment Classes to generate and describe sequence alignments. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of AbstractSymbolList in org.biojava.bio.alignment
 

Subclasses of AbstractSymbolList in org.biojava.bio.alignment
 class AbstractULAlignment
           
 class AbstractULAlignment.SubULAlignment
           
 class FlexibleAlignment
          FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment.
 

Uses of AbstractSymbolList in org.biojava.bio.seq.impl
 

Subclasses of AbstractSymbolList in org.biojava.bio.seq.impl
 class AssembledSymbolList
          Support class for applications which need to patch together sections of sequence into a single SymbolList.
 class NewAssembledSymbolList
          Support class for applications which need to patch together sections of sequence into a single SymbolList.
 class SimpleGappedSequence
          Simple implementation of GappedSequence.
 

Uses of AbstractSymbolList in org.biojava.bio.symbol
 

Subclasses of AbstractSymbolList in org.biojava.bio.symbol
 class ChunkedSymbolList
          SymbolList implementation using constant-size chunks.
 class DummySymbolList
          Symbol list which just consists of non-informative symbols.
 class PackedSymbolList
           A SymbolList that stores symbols as bit-patterns in an array of longs.
 class SimpleAlignment
          A simple implementation of an Alignment.
 class SimpleGappedSymbolList
          This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.
 class SimpleSymbolList
          Basic implementation of SymbolList.