Uses of Interface
org.biojava.bio.seq.io.agave.StAXHandlerFactory

Packages that use StAXHandlerFactory
org.biojava.bio.seq.io.agave Classes for converting between AGAVE XML and BioJava objects. 
 

Uses of StAXHandlerFactory in org.biojava.bio.seq.io.agave
 

Fields in org.biojava.bio.seq.io.agave declared as StAXHandlerFactory
static StAXHandlerFactory AGAVEAltIdsPropHandler.AGAVE_ALT_IDS_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEAnnotationsHandler.AGAVE_ANNOTATIONS_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEAssemblyHandler.AGAVE_ASSEMBLY_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEBioSeqHandler.AGAVE_BIO_SEQ_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEBioSequenceHandler.AGAVE_BIO_SEQUENCE_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVECdsHandler.AGAVE_CDS_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEChromosomeHandler.AGAVE_CHROMOSOME_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEClassificationHandler.AGAVE_CLASSIFICATION_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVECompResultHandler.AGAVE_COMP_RESULT_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEComputationHandler.AGAVE_COMPUTATION_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEContigHandler.AGAVE_CONTIG_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEDbIdPropHandler.AGAVE_DBID_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEDescPropHandler.AGAVE_DESC_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEElementIdPropHandler.AGAVE_ELEMENT_ID_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEEvidenceHandler.AGAVE_EVIDENCE_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEExonsPropHandler.AGAVE_EXONS_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEFragmentOrderHandler.AGAVE_FRAGMENT_ORDER_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEFragmentOrientationHandler.AGAVE_FRAGMENT_ORIENTATION_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEGeneHandler.AGAVE_GENE_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEIdAliasPropHandler.AGAVE_ID_ALIAS_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEKeywordPropHandler.AGAVE_KEYWORD_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEMapLocationPropHandler.AGAVE_MAP_LOCATION_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEMapPositionPropHandler.AGAVE_MAP_POSITION_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEMatchAlignPropHandler.AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEMatchDescPropHandler.AGAVE_MATCH_DESC_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEMatchRegionPropHandler.AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEMrnaHandler.AGAVE_MRNA_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVENotePropHandler.AGAVE_NOTE_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEPredictedProteinHandler.AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEQualifierPropHandler.AGAVE_QUALIFIER_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEQueryRegionPropHandler.AGAVE_QUERY_REGION_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVERelatedAnnotPropHandler.AGAVE_RELATED_ANNOT_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEResultGroupHandler.AGAVE_RESULT_GROUP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEResultPropertyPropHandler.AGAVE_RESULT_PROPERTY_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVESciPropertyPropHandler.AGAVE_SCI_PROPERTY_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVESeqFeatureHandler.AGAVE_SEQ_FEATURE_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVESeqLocationPropHandler.AGAVE_SEQ_LOCATION_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVESeqMapHandler.AGAVE_SEQ_MAP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVESeqPropHandler.AGAVE_SEQ_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVETranscriptHandler.AGAVE_TRANSCRIPT_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEUnorderedFragmentsHandler.AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEViewPropHandler.AGAVE_VIEW_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEXrefPropHandler.AGAVE_XREF_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEXrefPropPropHandler.AGAVE_XREF_PROP_PROP_HANDLER_FACTORY
           
static StAXHandlerFactory AGAVEXrefsPropHandler.AGAVE_XREFS_PROP_HANDLER_FACTORY
           
 

Methods in org.biojava.bio.seq.io.agave with parameters of type StAXHandlerFactory
protected  void StAXPropertyHandler.addHandler(ElementRecognizer rec, StAXHandlerFactory handler)
           
protected  void StAXFeatureHandler.addHandler(ElementRecognizer rec, StAXHandlerFactory handler)