Module | Bio::RestrictionEnzyme::CutSymbol |
In: |
lib/bio/util/restriction_enzyme/cut_symbol.rb
|
#require 'bio/util/restriction_enzyme/cut_symbol' require 'cut_symbol' include Bio::RestrictionEnzyme::CutSymbol cut_symbol # => "^" set_cut_symbol('|') # => "|" cut_symbol # => "|" escaped_cut_symbol # => "\\|" re_cut_symbol # => /\|/ set_cut_symbol('^') # => "^" "abc^de" =~ re_cut_symbol # => 3 "abc^de" =~ re_cut_symbol_adjacent # => nil "abc^^de" =~ re_cut_symbol_adjacent # => 3 "a^bc^^de" =~ re_cut_symbol_adjacent # => 4 "a^bc^de" =~ re_cut_symbol_adjacent # => nil
Get the token that‘s used as the cut symbol in a restriction enzyme sequece
Arguments
Returns: | glyph |
# File lib/bio/util/restriction_enzyme/cut_symbol.rb, line 53 53: def cut_symbol; CutSymbol__.cut_symbol; end
Get the token that‘s used as the cut symbol in a restriction enzyme sequece with a back-slash preceding it.
Arguments
Returns: | +\glyph+ |
# File lib/bio/util/restriction_enzyme/cut_symbol.rb, line 62 62: def escaped_cut_symbol; CutSymbol__.escaped_cut_symbol; end
A Regexp of the cut_symbol.
Arguments
Returns: | RegExp |
# File lib/bio/util/restriction_enzyme/cut_symbol.rb, line 80 80: def re_cut_symbol 81: %r"#{escaped_cut_symbol}" 82: end
Used to check if multiple cut symbols are next to each other.
Arguments
Returns: | RegExp |
# File lib/bio/util/restriction_enzyme/cut_symbol.rb, line 70 70: def re_cut_symbol_adjacent 71: %r"#{escaped_cut_symbol}{2}" 72: end
Set the token to be used as the cut symbol in a restriction enzyme sequece
Starts as +^+ character
Arguments
Returns: | glyph |
# File lib/bio/util/restriction_enzyme/cut_symbol.rb, line 43 43: def set_cut_symbol(glyph) 44: CutSymbol__.cut_symbol = glyph 45: end