Class | Bio::RestrictionEnzyme::Range::HorizontalCutRange |
In: |
lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
|
Parent: | CutRange |
c_cut_left | [R] | |
c_cut_right | [R] | |
hcuts | [R] | |
max | [R] | |
min | [R] | |
p_cut_left | [R] | |
p_cut_right | [R] |
# File lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb, line 22 22: def initialize( left, right=left ) 23: raise "left > right" if left > right 24: 25: # The 'range' here is actually off by one on the left 26: # side in relation to a normal CutRange, so using the normal 27: # variables from CutRange would result in bad behavior. 28: # 29: # See below - the first horizontal cut is the primary cut plus one. 30: # 31: # 1 2 3 4 5 6 7 32: # G A|T T A C A 33: # +-----+ 34: # C T A A T|G T 35: # 1 2 3 4 5 6 7 36: # 37: # Primary cut = 2 38: # Complement cut = 5 39: # Horizontal cuts = 3, 4, 5 40: 41: @p_cut_left = nil 42: @p_cut_right = nil 43: @c_cut_left = nil 44: @c_cut_right = nil 45: @min = left # NOTE this used to be 'nil', make sure all tests work 46: @max = right # NOTE this used to be 'nil', make sure all tests work 47: @range = (@min..@max) unless @min == nil or @max == nil # NOTE this used to be 'nil', make sure all tests work 48: 49: 50: @hcuts = (left..right) 51: end