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Packages that use TagValueListener | |
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org.biojava.bio.annodb | Databases of generic structured data (annotation) objects. |
org.biojava.bio.program.formats | Experimental parsers using the tagvalue framework. |
org.biojava.bio.program.tagvalue | Process files as streams of records, each with tags with values. |
org.biojava.bio.program.unigene | Objects for representing Unigene clusters. |
Uses of TagValueListener in org.biojava.bio.annodb |
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Methods in org.biojava.bio.annodb with parameters of type TagValueListener | |
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ParserListener |
IndexedAnnotationDB.ParserListenerFactory.getParserListener(TagValueListener listener)
Get the ParserListener for a TagValueListener. |
ParserListener |
IndexedAnnotationDB.StaticMethodRPFactory.getParserListener(TagValueListener tvl)
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Uses of TagValueListener in org.biojava.bio.program.formats |
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Methods in org.biojava.bio.program.formats with parameters of type TagValueListener | |
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ParserListener |
Swissprot.getParserListener(TagValueListener listener)
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ParserListener |
Ligand.Enzyme.getParserListener(TagValueListener listener)
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ParserListener |
Ligand.Reaction.getParserListener(TagValueListener listener)
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ParserListener |
Ligand.Compound.getParserListener(TagValueListener listener)
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ParserListener |
Format.getParserListener(TagValueListener listener)
Retrieve a ParserListener pair for the format that will pass all events on to a listener. |
ParserListener |
Enzyme.getParserListener(TagValueListener listener)
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ParserListener |
Embl.getParserListener(TagValueListener listener)
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Uses of TagValueListener in org.biojava.bio.program.tagvalue |
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Subinterfaces of TagValueListener in org.biojava.bio.program.tagvalue | |
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interface |
TagValueWrapper
Interface for TagValueListeners that wrap other TagValueListeners |
Classes in org.biojava.bio.program.tagvalue that implement TagValueListener | |
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class |
AbstractWrapper
An abstract TagValueWrapper that does nothing! |
class |
Aggregator
Joins multipel values into single values. |
class |
AnnotationBuilder
Builds an Annotation tree from TagValue events using an AnnotationType to work out which fields are of what type. |
class |
Echo
A simple listener that just echoes events back to the console. |
class |
Indexer
Listens to tag-value events and passes on indexing events to an IndexStore. |
class |
Indexer2
Listens to tag-value events and passes on indexing events to an IndexStore. |
class |
MultiTagger
Partician multiple values for a tag into their own tag groups. |
class |
RegexFieldFinder
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class |
SimpleTagValueWrapper
Helper class to wrap one TagValueListener inside another one. |
class |
StateMachine
This class implements a state machine for parsing events from the Parser class. |
class |
StateMachine.SimpleStateListener
a basic listener for a State. |
class |
TagDelegator
Pushes a new parser and listener, or delegate to a listener depending on the tag. |
class |
TagDropper
Silently drop all tags except those specified, and pass the rest onto a delegate. |
class |
TagRenamer
Rename tags using a TagMapper. |
class |
ValueChanger
Intercept the values associated with some tags and change them systematically. |
Fields in org.biojava.bio.program.tagvalue declared as TagValueListener | |
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protected TagValueListener |
StateMachine.delegate
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Methods in org.biojava.bio.program.tagvalue that return TagValueListener | |
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TagValueListener |
TagValueWrapper.getDelegate()
get listener to which all calls will be delegated |
TagValueListener |
StateMachine.getDelegate()
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TagValueListener |
SimpleTagValueWrapper.getDelegate()
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TagValueListener |
AbstractWrapper.getDelegate()
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TagValueListener |
StateMachine.State.getListener()
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TagValueListener |
StateMachine.BasicState.getListener()
return the TagValueListener assigned to this State. |
TagValueListener |
ParserListener.getListener()
getListener returns the listener of the pair. |
TagValueListener |
TagDelegator.getListener(Object tag)
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Methods in org.biojava.bio.program.tagvalue with parameters of type TagValueListener | |
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static ParserListener |
Formats.createEmblParserListener(TagValueListener listener)
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static ParserListener |
Formats.createSwissprotParserListener(TagValueListener listener)
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void |
TagValueContext.pushParser(TagValueParser subParser,
TagValueListener subListener)
Push a parser and listener pair onto the parser stack. |
boolean |
Parser.read(BufferedReader reader,
TagValueParser parser,
TagValueListener listener)
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void |
TagValueWrapper.setDelegate(TagValueListener delegate)
set listener to which all calls will be delegated |
void |
StateMachine.setDelegate(TagValueListener delegate)
TagValueWrapper interface |
void |
SimpleTagValueWrapper.setDelegate(TagValueListener delegate)
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void |
AbstractWrapper.setDelegate(TagValueListener delegate)
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void |
TagDelegator.setListener(Object tag,
TagValueListener listener)
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void |
StateMachine.BasicState.setListener(TagValueListener listener)
set a TagValueListener for this State. |
void |
TagDelegator.setParserListener(Object tag,
TagValueParser parser,
TagValueListener listener)
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Constructors in org.biojava.bio.program.tagvalue with parameters of type TagValueListener | |
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Aggregator(TagValueListener listener,
BoundaryFinder observer,
String joiner)
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MultiTagger(TagValueListener listener,
BoundaryFinder observer)
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ParserListener(TagValueParser parser,
TagValueListener listener)
Creates a new ParserListener instance. |
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RegexFieldFinder(TagValueListener delegate,
Pattern pattern,
String[] tags,
boolean inLine)
Creates a new RegexFiledFinder. |
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SimpleTagValueWrapper(TagValueListener delegate)
Build a SimpleTagValueWrapper that will forward everything to a delegate. |
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StateMachine.BasicState(String label,
TagValueListener listener)
when this constructor is used, a fixed listener is used with this state. |
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TagDelegator(TagValueListener delegate)
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TagDropper(TagValueListener tvl)
Create a new TagDropper that will pass on all retained tags and values to tvl. |
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TagRenamer(TagValueListener delegate,
PropertyChanger mapper)
Build a new TagRenamer with a delegate and mapper. |
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ValueChanger(TagValueListener delegate)
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ValueChanger(TagValueListener delegate,
ChangeTable changeTable)
Create a new changer that will pass the modified event stream to a delegate. |
Uses of TagValueListener in org.biojava.bio.program.unigene |
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Methods in org.biojava.bio.program.unigene with parameters of type TagValueListener | |
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static ParserListener |
UnigeneTools.buildDataParser(TagValueListener listener)
Generate a tag-value parser for unigene data files that will pass all parsing events on to your listener. |
static ParserListener |
UnigeneTools.buildLibInfoParser(TagValueListener listener)
Generate a tag-value parser for the library info unigene files. |
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