org.biojava.bio.dp
Interface ScoreType
- All Known Implementing Classes:
- ScoreType.NullModel, ScoreType.Odds, ScoreType.Probability
public interface ScoreType
This class computes the score that is used to be used
in a DP optimisation.
- Author:
- Matthew Pocock
Nested Class Summary |
static class |
ScoreType.NullModel
In this class, calculateScore returns the probability of
a Symbol being emitted by the null model. |
static class |
ScoreType.Odds
In this class, calculateScore returns the odds ratio
of a symbol being emitted. |
static class |
ScoreType.Probability
In this class, calculateScore returns the probability
of a Symbol being emitted. |
PROBABILITY
static final ScoreType PROBABILITY
ODDS
static final ScoreType ODDS
NULL_MODEL
static final ScoreType NULL_MODEL
calculateScore
double calculateScore(Distribution dist,
Symbol sym)
throws IllegalSymbolException
- Calculates the score associated with a distribution and a symbol.
- Throws:
IllegalSymbolException