Uses of Package
org.biojava.bio.program.homologene

Packages that use org.biojava.bio.program.homologene
org.biojava.bio.program.homologene Support classes for Homologene data. 
 

Classes in org.biojava.bio.program.homologene used by org.biojava.bio.program.homologene
AbstractOrthologueSet
           
AbstractOrthoPairCollection
          An abstract implementation of the OrthoPairCollection interface.
AbstractOrthoPairSet
          represents the Homologene Group.
DuplicateTaxonException
           
HomologeneBuilder
          an interface for Homologene dataset Builders
HomologeneDB
          Homologene is a NCBI dataset that curates sets of orthologues from the reference model organisms.
Orthologue
          this entry contains data about the orthologue.
OrthologueFilter
           
OrthologueSet
          Interface for classes that store and manipulate orthologues.
OrthologueSet.Iterator
          An iterator for the contents of an OrthologueSet.
OrthoPair
          Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.
OrthoPairCollection
          Interface for a Set of OrthoPairSets
OrthoPairCollection.Iterator
          Iterator for a OrthoPairCollection
OrthoPairFilter
           
OrthoPairSet
          represents the Homologene Group.
OrthoPairSet.Iterator
           
OrthoPairSetFilter
           
SimilarityType
          Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.
SimpleOrthoPairCollection
           
Taxon