Uses of Interface
org.biojava.bio.program.gff.GFFRecordFilter

Packages that use GFFRecordFilter
org.biojava.bio.program.gff GFF manipulation. 
 

Uses of GFFRecordFilter in org.biojava.bio.program.gff
 

Classes in org.biojava.bio.program.gff that implement GFFRecordFilter
static class GFFRecordFilter.AcceptAll
          Implementation of GFFRecordFilter that accepts everything.
static class GFFRecordFilter.FeatureFilter
          Implementation of GFFRecordFilter that accepts records based upon the feature field.
static class GFFRecordFilter.FrameFilter
           
static class GFFRecordFilter.NotFilter
           
static class GFFRecordFilter.SequenceFilter
          Implementation of GFFRecordFilter that accepts records based upon the sequence name.
static class GFFRecordFilter.SourceFilter
          Implementation of GFFRecordFilter that accepts records based upon the source field.
static class GFFRecordFilter.StrandFilter
           
 

Fields in org.biojava.bio.program.gff declared as GFFRecordFilter
static GFFRecordFilter GFFRecordFilter.ACCEPT_ALL
          A GFFRecordFilter that accepts everything.
 

Methods in org.biojava.bio.program.gff that return GFFRecordFilter
 GFFRecordFilter GFFRecordFilter.NotFilter.getFilter()
           
 

Methods in org.biojava.bio.program.gff with parameters of type GFFRecordFilter
 GFFEntrySet GFFEntrySet.filter(GFFRecordFilter filter)
          Filter this entry set into another set.
static GFFEntrySet GFFTools.readGFF(BufferedReader gffIn, GFFRecordFilter recFilt)
          Read all GFF entries matching a filter from a buffered reader.
static GFFEntrySet GFFTools.readGFF(File inFile, GFFRecordFilter recFilt)
          Reads a GFFEntrySet from a file with the specified filter.
static GFFEntrySet GFFTools.readGFF(String fileName, GFFRecordFilter recFilt)
          Deprecated. use: readGff(File,GFFRecordFilter)
 void GFFRecordFilter.NotFilter.setFilter(GFFRecordFilter filter)
           
 

Constructors in org.biojava.bio.program.gff with parameters of type GFFRecordFilter
GFFFilterer(GFFDocumentHandler handler, GFFRecordFilter filter)
          Create a new GFFFilterer that will forward to handler everything that filter accepts.
GFFRecordFilter.NotFilter(GFFRecordFilter filter)