Uses of Interface
org.biojava.bio.structure.AminoAcid

Packages that use AminoAcid
org.biojava.bio.structure Interfaces and classes for protein structure (PDB). 
 

Uses of AminoAcid in org.biojava.bio.structure
 

Classes in org.biojava.bio.structure that implement AminoAcid
 class AminoAcidImpl
          AminoAcid inherits most from Hetatom.
 

Methods in org.biojava.bio.structure that return AminoAcid
static AminoAcid StandardAminoAcid.getAminoAcid(String name)
          get a standard amino acid.
 AminoAcid Mutator.mutateResidue(AminoAcid oldAmino, String newType)
          create a new residue which is of the new type.
 

Methods in org.biojava.bio.structure with parameters of type AminoAcid
static Atom Calc.createVirtualCBAtom(AminoAcid amino)
          creates a virtual C-beta atom.
static double Calc.getPhi(AminoAcid a, AminoAcid b)
          phi angle.
static double Calc.getPsi(AminoAcid a, AminoAcid b)
          psi angle.
static boolean Calc.isConnected(AminoAcid a, AminoAcid b)
          test if two amino acids are connected, i.e.
 AminoAcid Mutator.mutateResidue(AminoAcid oldAmino, String newType)
          create a new residue which is of the new type.