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Packages that use AminoAcid | |
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org.biojava.bio.structure | Interfaces and classes for protein structure (PDB). |
Uses of AminoAcid in org.biojava.bio.structure |
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Classes in org.biojava.bio.structure that implement AminoAcid | |
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class |
AminoAcidImpl
AminoAcid inherits most from Hetatom. |
Methods in org.biojava.bio.structure that return AminoAcid | |
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static AminoAcid |
StandardAminoAcid.getAminoAcid(String name)
get a standard amino acid. |
AminoAcid |
Mutator.mutateResidue(AminoAcid oldAmino,
String newType)
create a new residue which is of the new type. |
Methods in org.biojava.bio.structure with parameters of type AminoAcid | |
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static Atom |
Calc.createVirtualCBAtom(AminoAcid amino)
creates a virtual C-beta atom. |
static double |
Calc.getPhi(AminoAcid a,
AminoAcid b)
phi angle. |
static double |
Calc.getPsi(AminoAcid a,
AminoAcid b)
psi angle. |
static boolean |
Calc.isConnected(AminoAcid a,
AminoAcid b)
test if two amino acids are connected, i.e. |
AminoAcid |
Mutator.mutateResidue(AminoAcid oldAmino,
String newType)
create a new residue which is of the new type. |
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