org.biojava.bio.seq.db
Class GenpeptSequenceDB
java.lang.Object
org.biojava.bio.seq.db.GenpeptSequenceDB
public class GenpeptSequenceDB
- extends Object
- Author:
- Lei Lai, Matthew Pocock, Shuvankar Mukherjee
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GenpeptSequenceDB
public GenpeptSequenceDB()
getSequenceFormat
protected SequenceFormat getSequenceFormat()
getAlphabet
protected Alphabet getAlphabet()
getAddress
protected URL getAddress(String id)
throws MalformedURLException
- Throws:
MalformedURLException
getAddress
protected URL getAddress(String id,
String format)
throws MalformedURLException
- Throws:
MalformedURLException
getName
public String getName()
getSequence
public Sequence getSequence(String id)
throws BioException
- Throws:
BioException
checkIOException
public boolean checkIOException()
checkException
public boolean checkException()