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ehmmpfam |
% ehmmpfam 7LES_DROME ../ehmm-own-keep/myhmms Align single sequence with an HMM Output file [7les_drome.ehmmpfam]: CS PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENV RF PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENV *->PsaPpnlsvtevtstsillsWwppdpggggyivyyvysegggdeeee Ps+P+n sv ++ + +sW pp+ ++ ++y +++++++d e++ 7LES_DROME 1799 PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENV 1845 CS QDRREWEAHERRLETAGTHRLTGIKPGSGYSLWVQAH RF QDRREWEAHERRLETAGTHRLTGIKPGSGYSLWVQAH ttpstsnttttllllllltytvyvvvvvsasssggsg<-* ++++ + ++++l + ++ + + +++s + + 7LES_DROME 1846 QDRREWEAHERRLETAGTHRLTGIKPGSGYSLWVQAH 1882 CS LKLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRKGASEFAELL RF LKLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRKGASEFAELL *->yelgekLGeGafGkVykakhkdtgkavaiKvikkekekekeeeteer ++l++ LG+GafG+Vy++++k ++ + + v++k+ +k e +e + 7LES_DROME 2209 LKLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRKGASEFAELL 2255 CS QEAQLMSNFKHENIVRLVGICFDTESISLIMEHMEAGDLLSYLRAARATS RF QEAQLMSNFKHENIVRLVGICFDTESISLIMEHMEAGDLLSYLRAARATS elrllknllhlniiilsehieytldlllllmellellllllllklrlvls ++++l+++ ++++i++++ i ++++++ l+me +e ++ll++l++ +++s 7LES_DROME 2256 QEAQLMSNFKHENIVRLVGICFDTESISLIMEHMEAGDLLSYLRAARATS 2305 CS TQEPQPTAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTEST RF TQEPQPTAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTEST elviaatliallliylllhhhlhidrkdlldlllldnlllikdidladlv ++ t l + l +++ + + l+d+++++++l++ + +++ + 7LES_DROME 2306 TQEPQPTAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTEST 2355 CS GSTDRRRTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFT RF GSTDRRRTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFT llgsstltkkttstgtyrapevlageyssssslsssevlslevllilllg +++++ +t k++++g r +++ +++ +++++l +++++s+e+l + l++ 7LES_DROME 2356 GSTDRRRTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFT 2405 CS TQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEK RF TQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEK tplgslldekllliildlifdpprpspleelsedlskllplplklrkpll t ++++++ l ++il+l+++p+ +++ e+ +++ ++l+++++++++ 7LES_DROME 2406 TQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEK 2455 CS LYSLLLLCWRTDPWERPSFRR RF LYSLLLLCWRTDPWERPSFRR lllplrlnplskllallsplk<-* l l l ++++++ ++s+++ 7LES_DROME 2456 LYSLLLLCWRTDPWERPSFRR 2476 |
Go to the input files for this example
Go to the output files for this example
Standard (Mandatory) qualifiers: [-seqall] seqall Sequence database USA [-hmmfile] infile HMM file [-outfile] outfile Output file name Additional (Optional) qualifiers: (none) Advanced (Unprompted) qualifiers: -nucleic boolean Force nucleic comparison -nalign integer Number of alignments -evalue float E-value cutoff -hitcut float Hit score cutoff -dbsize integer Calc E-value for DB size n -cpu integer Number of CPUs -dome float E-value domain cutoff -domt float Hit score domain cutoff -forward boolean Use forward algorithm -nulltwo boolean Turn off second null model -pvm boolean Use parallel virtual machine -xnu boolean Use XNU filtering Associated qualifiers: "-seqall" associated qualifiers -sbegin1 integer Start of each sequence to be used -send1 integer End of each sequence to be used -sreverse1 boolean Reverse (if DNA) -sask1 boolean Ask for begin/end/reverse -snucleotide1 boolean Sequence is nucleotide -sprotein1 boolean Sequence is protein -slower1 boolean Make lower case -supper1 boolean Make upper case -sformat1 string Input sequence format -sdbname1 string Database name -sid1 string Entryname -ufo1 string UFO features -fformat1 string Features format -fopenfile1 string Features file name "-outfile" associated qualifiers -odirectory3 string Output directory General qualifiers: -auto boolean Turn off prompts -stdout boolean Write standard output -filter boolean Read standard input, write standard output -options boolean Prompt for standard and additional values -debug boolean Write debug output to program.dbg -verbose boolean Report some/full command line options -help boolean Report command line options. More information on associated and general qualifiers can be found with -help -verbose -warning boolean Report warnings -error boolean Report errors -fatal boolean Report fatal errors -die boolean Report deaths |
Standard (Mandatory) qualifiers | Allowed values | Default | |
---|---|---|---|
[-seqall] (Parameter 1) |
Sequence database USA | Readable sequence(s) | Required |
[-hmmfile] (Parameter 2) |
HMM file | Input file | Required |
[-outfile] (Parameter 3) |
Output file name | Output file | <sequence>.ehmmpfam |
Additional (Optional) qualifiers | Allowed values | Default | |
(none) | |||
Advanced (Unprompted) qualifiers | Allowed values | Default | |
-nucleic | Force nucleic comparison | Boolean value Yes/No | No |
-nalign | Number of alignments | Any integer value | 100 |
-evalue | E-value cutoff | Any numeric value | 10. |
-hitcut | Hit score cutoff | Any numeric value | -1000000. |
-dbsize | Calc E-value for DB size n | Any integer value | 59021 |
-cpu | Number of CPUs | Any integer value | 0 |
-dome | E-value domain cutoff | Any numeric value | 1000000. |
-domt | Hit score domain cutoff | Any numeric value | -1000000. |
-forward | Use forward algorithm | Boolean value Yes/No | No |
-nulltwo | Turn off second null model | Boolean value Yes/No | No |
-pvm | Use parallel virtual machine | Boolean value Yes/No | No |
-xnu | Use XNU filtering | Boolean value Yes/No | No |
ID 7LES_DROME STANDARD; PRT; 2554 AA. AC P13368; DT 01-JAN-1990 (REL. 13, CREATED) DT 01-JAN-1990 (REL. 13, LAST SEQUENCE UPDATE) DT 01-NOV-1995 (REL. 32, LAST ANNOTATION UPDATE) DE SEVENLESS PROTEIN (EC 2.7.1.112). GN SEV. OS DROSOPHILA MELANOGASTER (FRUIT FLY). OC EUKARYOTA; METAZOA; ARTHROPODA; INSECTA; DIPTERA. RN [1] RP SEQUENCE FROM N.A. RC STRAIN=CANTON-S; RX MEDLINE; 88282538. RA BASLER K., HAFEN E.; RL CELL 54:299-311(1988). RN [2] RP SEQUENCE FROM N.A. RC STRAIN=OREGON-R; RX MEDLINE; 88329706. RA BOWTELL D.L.L., SIMON M.A., RUBIN G.M.; RL GENES DEV. 2:620-634(1988). RN [3] RP IDENTIFICATION OF FN-III REPEATS. RX MEDLINE; 90199889. RA NORTON P.A., HYNES R.O., RESS D.J.G.; RL CELL 61:15-16(1990). CC -!- FUNCTION: RECEPTOR FOR AN EXTRACELLULAR SIGNAL REQUIRED TO CC INSTRUCT A CELL TO DIFFERENTIATE INTO A R7 PHOTORECEPTOR. THE CC LIGAND FOR SEV IS THE BOSS (BRIDE OF SEVENLESS) PROTEIN ON THE CC SURFACE OF THE NEIGHBORING R8 CELL. CC -!- CATALYTIC ACTIVITY: ATP + A PROTEIN TYROSINE = ADP + CC PROTEIN TYROSINE PHOSPHATE. CC -!- SUBUNIT: MAY FORM A COMPLEX WITH DRK AND SOS. CC -!- SIMILARITY: BELONGS TO THE INSULIN RECEPTOR FAMILY OF TYROSINE- CC PROTEIN KINASES. CC -!- SIMILARITY: CONTAINS SEVEN FIBRONECTIN TYPE III-LIKE DOMAINS. CC -!- CAUTION: UNCLEAR WHETHER THE POTENTIAL MEMBRANE SPANNING REGION CC NEAR THE N-TERMINUS IS PRESENT AS A TRANSMEMBRANE DOMAIN IN THE CC NATIVE PROTEIN OR SERVES AS A CLEAVED SIGNAL SEQUENCE. DR EMBL; X13666; G8579; ALT_INIT. DR EMBL; J03158; G158419; -. DR PIR; A28912; TVFF7L. DR FLYBASE; FBGN0003366; SEV. DR PROSITE; PS00107; PROTEIN_KINASE_ATP. DR PROSITE; PS00109; PROTEIN_KINASE_TYR. DR PROSITE; PS00239; RECEPTOR_TYR_KIN_II. DR PROSITE; PS50011; PROTEIN_KINASE_DOM. KW TRANSFERASE; TYROSINE-PROTEIN KINASE; TRANSMEMBRANE; ATP-BINDING; KW PHOSPHORYLATION; RECEPTOR; VISION; REPEAT. FT DOMAIN 1 2123 EXTRACELLULAR (POTENTIAL). [Part of this file has been deleted for brevity] FT VARIANT 1703 1703 N -> H. FT VARIANT 1730 1730 R -> K. FT VARIANT 1731 1731 G -> E. FT VARIANT 1741 1741 V -> M. FT VARIANT 2271 2271 R -> C. FT CONFLICT 1823 1823 E -> Q (IN REF. 2). SQ SEQUENCE 2554 AA; 287107 MW; 1143D891 CRC32; MTMFWQQNVD HQSDEQDKQA KGAAPTKRLN ISFNVKIAVN VNTKMTTTHI NQQAPGTSSS SSNSQNASPS KIVVRQQSSS FDLRQQLARL GRQLASGQDG HGGISTILII NLLLLILLSI CCDVCRSHNY TVHQSPEPVS KDQMRLLRPK LDSDVVEKVA IWHKHAAAAP PSIVEGIAIS SRPQSTMAHH PDDRDRDRDP SEEQHGVDER MVLERVTRDC VQRCIVEEDL FLDEFGIQCE KADNGEKCYK TRCTKGCAQW YRALKELESC QEACLSLQFY PYDMPCIGAC EMAQRDYWHL QRLAISHLVE RTQPQLERAP RADGQSTPLT IRWAMHFPEH YLASRPFNIQ YQFVDHHGEE LDLEQEDQDA SGETGSSAWF NLADYDCDEY YMCEILEALI PYTQYRFRFE LPFGENRDEV LYSPATPAYQ TPPEGAPISA PVIEHLMGLD DSHLAVHWHP GRFTNGPIEG YRLRLSSSEG NATSEQLVPA GRGSYIFSQL QAGTNYTLAL SMINKQGEGP VAKGFVQTHS ARNEKPAKDL TESVLLVGRR AVMWQSLEPA GENSMIYQSQ EELADIAWSK REQQLWLLNV HGELRSLKFE SGQMVSPAQQ LKLDLGNISS GRWVPRRLSF DWLHHRLYFA MESPERNQSS FQIISTDLLG ESAQKVGESF DLPVEQLEVD ALNGWIFWRN EESLWRQDLH GRMIHRLLRI RQPGWFLVQP QHFIIHLMLP QEGKFLEISY DGGFKHPLPL PPPSNGAGNG PASSHWQSFA LLGRSLLLPD SGQLILVEQQ GQAASPSASW PLKNLPDCWA VILLVPESQP LTSAGGKPHS LKALLGAQAA KISWKEPERN PYQSADAARS WSYELEVLDV ASQSAFSIRN IRGPIFGLQR LQPDNLYQLR VRAINVDGEP GEWTEPLAAR TWPLGPHRLR WASRQGSVIH TNELGEGLEV QQEQLERLPG PMTMVNESVG YYVTGDGLLH CINLVHSQWG CPISEPLQHV GSVTYDWRGG RVYWTDLARN CVVRMDPWSG SRELLPVFEA NFLALDPRQG HLYYATSSQL SRHGSTPDEA VTYYRVNGLE GSIASFVLDT QQDQLFWLVK GSGALRLYRA PLTAGGDSLQ MIQQIKGVFQ AVPDSLQLLR PLGALLWLER SGRRARLVRL AAPLDVMELP TPDQASPASA LQLLDPQPLP PRDEGVIPMT VLPDSVRLDD GHWDDFHVRW QPSTSGGNHS VSYRLLLEFG QRLQTLDLST PFARLTQLPQ AQLQLKISIT PRTAWRSGDT TRVQLTTPPV APSQPRRLRV FVERLATALQ EANVSAVLRW DAPEQGQEAP MQALEYHISC WVGSELHEEL RLNQSALEAR VEHLQPDQTY HFQVEARVAA TGAAAGAASH ALHVAPEVQA VPRVLYANAE FIGELDLDTR NRRRLVHTAS PVEHLVGIEG EQRLLWVNEH VELLTHVPGS APAKLARMRA EVLALAVDWI QRIVYWAELD ATAPQAAIIY RLDLCNFEGK ILQGERVWST PRGRLLKDLV ALPQAQSLIW LEYEQGSPRN GSLRGRNLTD GSELEWATVQ PLIRLHAGSL EPGSETLNLV DNQGKLCVYD VARQLCTASA LRAQLNLLGE DSIAGQLAQD SGYLYAVKNW SIRAYGRRRQ QLEYTVELEP EEVRLLQAHN YQAYPPKNCL LLPSSGGSLL KATDCEEQRC LLNLPMITAS EDCPLPIPGV RYQLNLTLAR GPGSEEHDHG VEPLGQWLLG AGESLNLTDL LPFTRYRVSG ILSSFYQKKL ALPTLVLAPL ELLTASATPS PPRNFSVRVL SPRELEVSWL PPEQLRSESV YYTLHWQQEL DGENVQDRRE WEAHERRLET AGTHRLTGIK PGSGYSLWVQ AHATPTKSNS SERLHVRSFA ELPELQLLEL GPYSLSLTWA GTPDPLGSLQ LECRSSAEQL RRNVAGNHTK MVVEPLQPRT RYQCRLLLGY AATPGAPLYH GTAEVYETLG DAPSQPGKPQ LEHIAEEVFR VTWTAARGNG APIALYNLEA LQARSDIRRR RRRRRRNSGG SLEQLPWAEE PVVVEDQWLD FCNTTELSCI VKSLHSSRLL LFRVRARSLE HGWGPYSEES ERVAEPFVSP EKRGSLVLAI IAPAAIVSSC VLALVLVRKV QKRRLRAKKL LQQSRPSIWS NLSTLQTQQQ LMAVRNRAFS TTLSDADIAL LPQINWSQLK LLRFLGSGAF GEVYEGQLKT EDSEEPQRVA IKSLRKGASE FAELLQEAQL MSNFKHENIV RLVGICFDTE SISLIMEHME AGDLLSYLRA ARATSTQEPQ PTAGLSLSEL LAMCIDVANG CSYLEDMHFV HRDLACRNCL VTESTGSTDR RRTVKIGDFG LARDIYKSDY YRKEGEGLLP VRWMSPESLV DGLFTTQSDV WAFGVLCWEI LTLGQQPYAA RNNFEVLAHV KEGGRLQQPP MCTEKLYSLL LLCWRTDPWE RPSFRRCYNT LHAISTDLRR TQMASATADT VVSCSRPEFK VRFDGQPLEE HREHNERPED ENLTLREVPL KDKQLYANEG VSRL // |
HMMER2.0 NAME 7LES_DROME/1799-1891 ACC DESC LENG 84 ALPH Amino RF yes CS yes MAP yes COM ehmmbuild ../../data/hmm/fn3.slx fn3.hmm COM ehmmcalibrate myhmms -seed 1079460101 NSEQ 109 DATE Fri Feb 18 09:57:19 2005 CKSUM 4633 XT -8455 -4 0 * -8455 -4 0 * NULT -4 -8455 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644 EVD -7.797886 0.598186 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d b->m m->e -13 * -6794 1 -1696 -4266 -5468 -857 -4249 -2813 -1464 -707 -2361 323 -3458 -4826 3646 -1897 -4829 -1261 -1335 -180 -4697 -1445 1 P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 P -9 -11957 -12999 -894 -1115 -701 -1378 -1013 -7375 2 -661 -5430 1594 -484 -5749 356 -3594 -5499 -1902 -454 -4519 -541 1746 -1534 -3682 1881 -218 -1175 -5614 -1565 2 S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 S -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7366 3 1863 -5433 -1246 26 -5754 -787 -3592 -5505 174 -2261 -4522 -578 2069 517 -53 117 -885 -568 -5616 -1862 3 P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 P -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7358 4 -933 -4330 -2306 -2375 -4321 -5548 -4342 -197 -4555 -1694 -3520 -1961 3679 -1767 -2193 -4571 -2165 1336 -4755 -4362 4 P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 P -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7349 5 -1820 -5403 -2308 327 -457 168 -395 -1516 -104 -520 -384 -3583 1306 1270 1192 730 882 -1087 -5594 -1860 5 R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 R -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7340 6 -982 -749 1190 -1011 -1118 1264 -288 -624 -762 -1316 -4520 2373 -1293 508 144 -1253 226 -5052 -320 -1913 6 N -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 N -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7331 7 -970 -4169 -164 -707 -29 -1178 -4516 340 -5043 1932 627 101 392 -968 -2232 -4736 -2233 1416 -4614 -4253 7 F -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 F -10 -11957 -12999 -894 -1115 -701 -1378 -7388 -7322 8 -1777 -5430 -1395 -133 -485 -1202 1638 -150 523 -314 -4519 -1070 -385 709 1029 806 906 500 -5614 -4932 8 S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 S -10 -11957 -12999 -894 -1115 -701 -1378 -7388 -7313 9 1184 673 -6214 -5601 1588 -1269 -129 561 -975 -1205 -1064 -2147 -1311 219 -852 -479 57 1890 -4575 -4223 9 V -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 V -10 -11957 -12999 -894 -1115 -701 -1378 -7388 -7304 10 -618 -1044 -126 168 -1034 -1670 -1237 -302 -47 -169 624 -828 -5103 -865 -727 1021 1874 314 666 -1660 10 R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 [Part of this file has been deleted for brevity] V -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 V -17 -11290 -12332 -894 -1115 -701 -1378 -7171 -6443 57 415 -235 151 -1692 196 -943 -3424 1368 -281 543 1497 -1265 -4765 1123 -714 -1118 -698 331 -4311 -27 57 L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 L -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6426 58 -392 -4801 1422 154 257 -976 -325 -348 1136 -182 -518 -449 -582 84 1071 -42 -259 -4422 -4984 -1114 58 D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 D -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6409 59 1019 -244 -720 268 -486 -304 -511 -857 -597 384 -3883 1880 -1432 25 -266 -599 544 -1258 -4979 -4298 59 Q -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 Q -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6392 60 -648 -361 -1645 149 -1712 -98 -2976 195 284 942 2156 1642 -1798 637 -685 -614 -1393 -4368 -4953 -253 60 K -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 K -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6375 61 -495 -127 596 257 1 687 -344 -4870 388 -1674 888 2158 -252 554 -557 -1192 -645 -925 -4984 -1289 61 E -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 E -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6358 62 -1174 -4786 -513 345 -470 1975 1744 -1919 674 -976 236 503 -2145 935 -1306 -3214 -1546 -956 -4974 781 62 H -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 H -19 -11292 -12334 -894 -1115 -701 -1378 -7171 -6340 63 -666 -120 197 263 443 569 -3004 492 662 -346 -777 690 -4431 450 -205 -417 -479 105 -4895 226 63 R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 R -19 -11292 -12334 -894 -1115 -701 -1378 -7171 -6322 64 -1695 -4564 90 808 321 -207 -958 170 606 -195 1319 -1668 -4468 42 233 -1958 -348 952 -101 1161 64 L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 L -19 -11248 -12290 -894 -1115 -701 -1378 -7171 -6304 65 -103 -4195 176 -803 -407 598 -3169 618 -250 684 -592 616 -392 -2836 -1348 -575 500 786 -4517 -956 65 D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 D -19 -11169 -12211 -894 -1115 -701 -1378 -7171 -6285 66 -3216 -41 863 117 14 1749 -370 -4753 -18 -877 1184 927 -1393 -238 899 -1126 -134 -1669 -4869 -1116 66 G -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 G -20 -11119 -12161 -894 -1115 -701 -1378 -7171 -6267 67 -883 -66 -1410 -539 -4946 1730 1102 -1518 1448 -2272 -346 1076 -4239 -706 -71 146 -220 -811 543 -284 67 R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 R -20 -11076 -12119 -894 -1115 -701 -1378 -7171 -6248 68 -3135 -4561 -1467 -537 -307 -479 -2777 700 1697 -450 -3655 168 -4209 -801 2141 -780 -67 349 -4756 -4085 68 V -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 V -20 -11004 -12046 -894 -1115 -701 -1378 -7171 -6229 69 -554 1467 -1099 262 -1323 -4214 -2905 -212 965 313 -172 -1196 916 -979 443 -902 161 1207 401 -3800 69 I -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 I -20 -10946 -11988 -894 -1115 -701 -1378 -7171 -6209 70 -286 -3937 -130 157 -851 -1526 -2879 1413 133 1121 -3083 -2959 -59 -13 194 -3121 -1149 916 -4255 122 70 D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 D -21 -10829 -11871 -894 -1115 -701 -1378 -7171 -6190 71 -1515 -4363 -145 -970 -4677 -1647 -167 764 1490 -1304 418 -973 10 -592 1727 -649 -596 1115 -4551 -717 71 P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 P -21 -10478 -11520 -894 -1115 -701 -1378 -7171 -6170 72 -1247 1262 534 -2707 -3242 -1113 -2669 654 698 -335 -2371 -2868 -791 -448 781 -2905 -104 2274 -3578 -3123 72 K * * * * * * * * * * * * * * * * * * * * K * * * * * * * -7171 0 // |
Query: 7LES_DROME SEVENLESS PROTEIN (EC 2.7.1.112). Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- 7LES_DROME/2209-2481 115.9 7.6e-31 1 7LES_DROME/1799-1891 32.1 2.5e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- 7LES_DROME/1799-1891 1/1 1799 1882 .. 1 84 [] 32.1 2.5e-06 7LES_DROME/2209-2481 1/1 2209 2476 .. 1 268 [] 115.9 7.6e-31 Alignments of top-scoring domains: 7LES_DROME/1799-1891: domain 1 of 1, from 1799 to 1882: score 32.1, E = 2.5e-06 7LES_DROME/2209-2481: domain 1 of 1, from 2209 to 2476: score 115.9, E = 7.6e-31 // |
Program name | Description |
---|---|
ealistat | Statistics for multiple alignment files |
ehmmalign | Align sequences with an HMM |
ehmmbuild | Build HMM |
ehmmcalibrate | Calibrate a hidden Markov model |
ehmmconvert | Convert between HMM formats |
ehmmemit | Extract HMM sequences |
ehmmfetch | Extract HMM from a database |
ehmmindex | Index an HMM database |
ehmmsearch | Search sequence database with an HMM |
Although we take every care to ensure that the results of the EMBOSS version are identical to those from the original package, we recommend that you check your inputs give the same results in both versions before publication.
Please report all bugs in the EMBOSS version to the EMBOSS bug team, not to the original author.