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ehmmconvert |
% ehmmconvert rrm.hmm rrm.hmm Convert between HMM formats - converted rrm 1 HMM(s) converted and written to rrm.hmm |
Go to the input files for this example
Go to the output files for this example
Example 2
% ehmmconvert rrm.hmm rrm.hmm -format b Convert between HMM formats - converted rrm 1 HMM(s) converted and written to rrm.hmm |
Go to the output files for this example
Example 3
% ehmmconvert rrm.hmm rrm.hmm -format g Convert between HMM formats - converted rrm 1 HMM(s) converted and written to rrm.hmm |
Go to the output files for this example
Example 4
% ehmmconvert rrm.hmm rrm.hmm -format x Convert between HMM formats - converted rrm 1 HMM(s) converted and written to rrm.hmm |
Go to the output files for this example
Standard (Mandatory) qualifiers: [-infile] infile HMM file [-outfile] outfile Output file name Additional (Optional) qualifiers: (none) Advanced (Unprompted) qualifiers: -format menu Select format -append boolean Append to file -force boolean Force overwriting Associated qualifiers: "-outfile" associated qualifiers -odirectory2 string Output directory General qualifiers: -auto boolean Turn off prompts -stdout boolean Write standard output -filter boolean Read standard input, write standard output -options boolean Prompt for standard and additional values -debug boolean Write debug output to program.dbg -verbose boolean Report some/full command line options -help boolean Report command line options. More information on associated and general qualifiers can be found with -help -verbose -warning boolean Report warnings -error boolean Report errors -fatal boolean Report fatal errors -die boolean Report deaths |
Standard (Mandatory) qualifiers | Allowed values | Default | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
[-infile] (Parameter 1) |
HMM file | Input file | Required | ||||||||
[-outfile] (Parameter 2) |
Output file name | Output file | <sequence>.ehmmconvert | ||||||||
Additional (Optional) qualifiers | Allowed values | Default | |||||||||
(none) | |||||||||||
Advanced (Unprompted) qualifiers | Allowed values | Default | |||||||||
-format | Select format |
|
A | ||||||||
-append | Append to file | Boolean value Yes/No | No | ||||||||
-force | Force overwriting | Boolean value Yes/No | No |
HMMER2.0 NAME rrm DESC LENG 72 ALPH Amino RF no CS no MAP yes COM ../src/hmmbuild -F rrm.hmm rrm.slx COM ../src/hmmcalibrate rrm.hmm NSEQ 70 DATE Wed Jul 8 08:13:25 1998 CKSUM 2768 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4 NULT -4 -8455 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644 EVD -53.840649 0.214434 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d b->m m->e -21 * -6129 1 -1234 -371 -8214 -7849 -5304 -8003 -7706 2384 -7769 2261 -681 -7660 -7694 -7521 -7816 -7346 -5543 1527 -6974 -6639 1 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 -21 * 2 -3634 -3460 -5973 -5340 3521 -2129 -4036 -831 -2054 -1257 -2663 -4822 -5229 -4557 -4735 -1979 -1569 -1476 -3893 3439 2 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 3 -5570 838 -8268 -7958 -5637 -8152 -8243 2427 -7947 -461 -539 -7805 -7843 -7878 -8124 -7550 -5559 3130 -7481 -7000 3 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 4 -1146 -4797 -1564 -2630 -1480 2769 -2963 -1850 992 -4812 -3887 737 -4397 -120 793 -205 -1019 -4418 -4981 -1059 4 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 5 -5242 -7035 445 -3538 -7284 1773 -4583 -7166 -4676 -7046 -6312 3633 -1651 -1262 -849 -1278 -5287 -6650 -7228 -291 5 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 6 -6898 -6238 -9292 -8703 -410 -9176 -7772 820 -8535 3071 -753 -8917 -8033 -7171 -7955 -8614 -6722 5 -6136 -6414 6 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 278 394 45 96 359 117 -369 -294 -249 - -33 -6025 -12326 -153 -3315 -701 -1378 * * 7 -5 -5297 178 -2982 -5685 -2278 -528 -5452 -1615 -5394 -4488 1396 3136 -3022 -3659 780 976 -4981 -5565 -4854 8 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12327 -894 -1115 -701 -1378 * * 8 -3329 -4799 -805 543 789 -4303 572 -4868 140 -1087 -3888 -603 1691 530 183 -162 293 -2124 2317 2037 9 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -12 -11284 -12327 -894 -1115 -701 -1378 * * 9 -373 -4801 2182 1353 -1426 44 -407 -1928 -366 -4817 -3891 1263 -4395 -1080 -666 295 50 -1947 -4985 397 10 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -12 -11285 -12327 -894 -1115 -701 -1378 * * 10 450 1883 -5953 -5317 -1256 -1301 -4027 1322 -1847 -283 1542 -4802 -5206 -1502 -4713 -4241 2143 1615 -3893 -3551 11 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -12 -11285 -12327 -894 -1115 -701 -1378 * * [Part of this file has been deleted for brevity] - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -17 -11290 -12332 -894 -1115 -701 -1378 * * 57 -2038 -3436 -5943 -5308 -1145 -5154 -4025 2255 423 1498 1203 -4797 -1707 -478 -1267 -2117 -3548 1450 -3893 -931 75 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11291 -12333 -894 -1115 -701 -1378 * * 58 622 -4802 1764 1486 -5123 -4302 -2961 -1060 334 -4818 -3891 -420 -4396 1293 1148 487 -3268 -1087 -4985 -429 76 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -102 -11291 -4156 -894 -1115 -701 -1378 * * 59 1265 -231 -1498 1351 -5045 -262 -355 -4796 922 -1073 -3813 778 -4318 877 -34 53 386 -2030 289 -4225 77 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11207 -12249 -894 -1115 -160 -3250 * * 60 -684 813 -5723 -473 532 -2124 -3981 -2958 -121 2114 2840 -1421 -5174 -4409 -926 -4196 -1685 -376 -3915 497 78 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11291 -12333 -894 -1115 -701 -1378 * * 61 -1812 -4803 1626 -749 -515 -1133 -415 -4875 -1294 -4819 -3892 3181 -793 1470 -1377 -246 -3268 -4425 -4986 -193 79 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11291 -12333 -894 -1115 -701 -1378 * * 62 -1812 -4808 -1465 33 -1509 2998 1583 -4879 122 -4823 -3897 972 -4400 -1078 -3055 -1613 -682 -4429 -4991 -1114 80 - -149 -500 232 43 -378 398 105 -627 212 -466 -721 275 393 45 98 359 117 -367 -295 -250 - -98 -4229 -12334 -49 -4901 -701 -1378 * * 63 -676 -4701 -742 -1422 825 -589 -545 255 1702 -2571 812 -2986 -4424 796 418 -221 1302 -1179 -4912 1028 82 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12334 -894 -1115 -701 -1378 * * 64 -3341 -4695 350 1378 -1551 -1973 -2998 477 1265 78 273 -1163 21 504 -1507 -1108 282 114 -19 473 83 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12334 -894 -1115 -701 -1378 * * 65 -3605 -3444 -949 -2090 2356 -1177 -4010 1410 -1703 1341 -404 -1673 -747 -4487 -4679 -2139 -1048 1197 -3900 411 84 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12334 -894 -1115 -701 -1378 * * 66 -655 -539 1179 279 -1324 1202 -2962 -1895 147 -682 1298 1427 -2056 608 756 -1119 -1893 -4419 -4982 140 85 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12335 -894 -1115 -701 -1378 * * 67 -1814 -4814 166 -2636 -5135 2921 -568 -4885 -1333 -2415 -3903 1495 -4406 -312 -619 602 -1672 -4436 -4997 -4314 86 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12335 -894 -1115 -701 -1378 * * 68 -3329 1217 -624 -797 -1594 -4303 1580 -4872 2069 -2414 -3890 617 -4396 283 2449 -560 -267 -2067 -4984 -1334 87 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12335 -894 -1115 -701 -1378 * * 69 108 566 -1460 747 -1608 -4306 -2965 -30 1407 -2607 -3878 346 1033 -336 863 -1038 745 617 -4975 -4296 88 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12335 -894 -1115 -701 -1378 * * 70 -1318 -3465 -283 -172 -3423 -2053 -3974 1957 -4721 1761 1425 -4678 -1762 -4391 -1578 -1974 -1561 1341 -3918 -3570 89 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12336 -894 -1115 -701 -1378 * * 71 -1165 -4790 -240 -275 -5105 -4306 1035 -2009 1665 -395 707 -1334 -218 -188 1891 -1077 -383 404 110 348 90 - -149 -500 233 43 -381 398 106 -626 210 -464 -720 275 394 45 96 359 117 -369 -294 -249 - -43 -6001 -12336 -150 -3342 -701 -1378 * * 72 -1929 1218 -1535 -1647 -3990 -4677 -3410 1725 207 -1481 -3117 -3608 -810 -1118 -743 -1942 428 2687 -4325 -3869 92 - * * * * * * * * * * * * * * * * * * * * - * * * * * * * * 0 // |
HMMER2.0 NAME rrm DESC LENG 72 ALPH Amino RF no CS no MAP yes COM ../src/hmmbuild -F rrm.hmm rrm.slx COM ../src/hmmcalibrate rrm.hmm NSEQ 70 DATE Wed Jul 8 08:13:25 1998 CKSUM 2768 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4 NULT -4 -8455 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644 EVD -53.840649 0.214434 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d b->m m->e -21 * -6129 1 -1234 -371 -8214 -7849 -5304 -8003 -7706 2384 -7769 2261 -681 -7660 -7694 -7521 -7816 -7346 -5543 1527 -6974 -6639 1 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 -21 * 2 -3634 -3460 -5973 -5340 3521 -2129 -4036 -831 -2054 -1257 -2663 -4822 -5229 -4557 -4735 -1979 -1569 -1476 -3893 3439 2 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 3 -5570 838 -8268 -7958 -5637 -8152 -8243 2427 -7947 -461 -539 -7805 -7843 -7878 -8124 -7550 -5559 3130 -7481 -7000 3 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 4 -1146 -4797 -1564 -2630 -1480 2769 -2963 -1850 992 -4812 -3887 737 -4397 -120 793 -205 -1019 -4418 -4981 -1059 4 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 5 -5242 -7035 445 -3538 -7284 1773 -4583 -7166 -4676 -7046 -6312 3633 -1651 -1262 -849 -1278 -5287 -6650 -7228 -291 5 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12326 -894 -1115 -701 -1378 * * 6 -6898 -6238 -9292 -8703 -410 -9176 -7772 820 -8535 3071 -753 -8917 -8033 -7171 -7955 -8614 -6722 5 -6136 -6414 6 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 278 394 45 96 359 117 -369 -294 -249 - -33 -6025 -12326 -153 -3315 -701 -1378 * * 7 -5 -5297 178 -2982 -5685 -2278 -528 -5452 -1615 -5394 -4488 1396 3136 -3022 -3659 780 976 -4981 -5565 -4854 8 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -11 -11284 -12327 -894 -1115 -701 -1378 * * 8 -3329 -4799 -805 543 789 -4303 572 -4868 140 -1087 -3888 -603 1691 530 183 -162 293 -2124 2317 2037 9 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -12 -11284 -12327 -894 -1115 -701 -1378 * * 9 -373 -4801 2182 1353 -1426 44 -407 -1928 -366 -4817 -3891 1263 -4395 -1080 -666 295 50 -1947 -4985 397 10 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -12 -11285 -12327 -894 -1115 -701 -1378 * * 10 450 1883 -5953 -5317 -1256 -1301 -4027 1322 -1847 -283 1542 -4802 -5206 -1502 -4713 -4241 2143 1615 -3893 -3551 11 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -12 -11285 -12327 -894 -1115 -701 -1378 * * [Part of this file has been deleted for brevity] - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -17 -11290 -12332 -894 -1115 -701 -1378 * * 57 -2038 -3436 -5943 -5308 -1145 -5154 -4025 2255 423 1498 1203 -4797 -1707 -478 -1267 -2117 -3548 1450 -3893 -931 75 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11291 -12333 -894 -1115 -701 -1378 * * 58 622 -4802 1764 1486 -5123 -4302 -2961 -1060 334 -4818 -3891 -420 -4396 1293 1148 487 -3268 -1087 -4985 -429 76 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -102 -11291 -4156 -894 -1115 -701 -1378 * * 59 1265 -231 -1498 1351 -5045 -262 -355 -4796 922 -1073 -3813 778 -4318 877 -34 53 386 -2030 289 -4225 77 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11207 -12249 -894 -1115 -160 -3250 * * 60 -684 813 -5723 -473 532 -2124 -3981 -2958 -121 2114 2840 -1421 -5174 -4409 -926 -4196 -1685 -376 -3915 497 78 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11291 -12333 -894 -1115 -701 -1378 * * 61 -1812 -4803 1626 -749 -515 -1133 -415 -4875 -1294 -4819 -3892 3181 -793 1470 -1377 -246 -3268 -4425 -4986 -193 79 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -18 -11291 -12333 -894 -1115 -701 -1378 * * 62 -1812 -4808 -1465 33 -1509 2998 1583 -4879 122 -4823 -3897 972 -4400 -1078 -3055 -1613 -682 -4429 -4991 -1114 80 - -149 -500 232 43 -378 398 105 -627 212 -466 -721 275 393 45 98 359 117 -367 -295 -250 - -98 -4229 -12334 -49 -4901 -701 -1378 * * 63 -676 -4701 -742 -1422 825 -589 -545 255 1702 -2571 812 -2986 -4424 796 418 -221 1302 -1179 -4912 1028 82 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12334 -894 -1115 -701 -1378 * * 64 -3341 -4695 350 1378 -1551 -1973 -2998 477 1265 78 273 -1163 21 504 -1507 -1108 282 114 -19 473 83 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12334 -894 -1115 -701 -1378 * * 65 -3605 -3444 -949 -2090 2356 -1177 -4010 1410 -1703 1341 -404 -1673 -747 -4487 -4679 -2139 -1048 1197 -3900 411 84 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12334 -894 -1115 -701 -1378 * * 66 -655 -539 1179 279 -1324 1202 -2962 -1895 147 -682 1298 1427 -2056 608 756 -1119 -1893 -4419 -4982 140 85 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -19 -11292 -12335 -894 -1115 -701 -1378 * * 67 -1814 -4814 166 -2636 -5135 2921 -568 -4885 -1333 -2415 -3903 1495 -4406 -312 -619 602 -1672 -4436 -4997 -4314 86 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12335 -894 -1115 -701 -1378 * * 68 -3329 1217 -624 -797 -1594 -4303 1580 -4872 2069 -2414 -3890 617 -4396 283 2449 -560 -267 -2067 -4984 -1334 87 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12335 -894 -1115 -701 -1378 * * 69 108 566 -1460 747 -1608 -4306 -2965 -30 1407 -2607 -3878 346 1033 -336 863 -1038 745 617 -4975 -4296 88 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12335 -894 -1115 -701 -1378 * * 70 -1318 -3465 -283 -172 -3423 -2053 -3974 1957 -4721 1761 1425 -4678 -1762 -4391 -1578 -1974 -1561 1341 -3918 -3570 89 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -20 -11293 -12336 -894 -1115 -701 -1378 * * 71 -1165 -4790 -240 -275 -5105 -4306 1035 -2009 1665 -395 707 -1334 -218 -188 1891 -1077 -383 404 110 348 90 - -149 -500 233 43 -381 398 106 -626 210 -464 -720 275 394 45 96 359 117 -369 -294 -249 - -43 -6001 -12336 -150 -3342 -701 -1378 * * 72 -1929 1218 -1535 -1647 -3990 -4677 -3410 1725 207 -1481 -3117 -3608 -810 -1118 -743 -1942 428 2687 -4325 -3869 92 - * * * * * * * * * * * * * * * * * * * * - * * * * * * * * 0 // |
This file contains non-printing characters and so cannot be displayed here.
!!AA_PROFILE 1.0 (Peptide) HMMCONVERT v2.1.1 Length: 72 rrm|| Profile converted from a profile HMM using HMMER v2.1.1 emulation. Use -nonor -noave -gap=10 -len=1 with profilesearch and friends to get the closest approximation to HMMER bit scores. WARNING: There is a loss of information in this conversion. Neither the scores nor even the rank order of hits will be precisely preserved in a comparison of HMMER hmmsearch to GCG profilesearch. The profile score is an approximation of the (single-hit) HMMER score. Cons A C D E F G H I K L M N P Q R S T V W Y B Z X Gap Len .. L -124 -37 -822 -785 -531 -801 -771 237 -777 225 -68 -766 -770 -752 -782 -735 -555 152 -698 -664 -796 -772 -458 100 100 F -364 -346 -598 -534 351 -213 -404 -83 -206 -126 -267 -482 -523 -456 -474 -198 -157 -148 -390 343 -544 -504 -260 110 111 V -557 83 -827 -796 -564 -815 -825 242 -795 -46 -54 -781 -785 -788 -813 -755 -556 312 -748 -700 -806 -793 -517 110 111 G -115 -480 -157 -263 -148 276 -297 -185 98 -481 -389 73 -440 -12 78 -21 -102 -442 -498 -106 -51 -166 -155 110 111 N -524 -704 43 -354 -729 176 -459 -717 -468 -705 -631 362 -165 -126 -85 -128 -529 -665 -723 -29 190 -265 -343 110 111 L -692 -626 -932 -873 -43 -920 -780 79 -856 304 -78 -894 -806 -720 -798 -864 -675 -2 -616 -644 -914 -813 -549 110 111 P -1 -530 17 -298 -569 -228 -53 -545 -162 -540 -449 138 312 -302 -366 77 96 -498 -557 -486 73 -300 -222 28 331 P -333 -480 -81 53 78 -431 56 -487 13 -109 -389 -61 168 52 17 -17 28 -213 230 202 -71 52 -101 110 111 D -38 -480 217 134 -143 3 -41 -193 -37 -482 -389 125 -440 -108 -67 28 4 -195 -499 38 175 39 -104 110 111 T 44 187 -596 -532 -126 -130 -403 131 -185 -29 153 -481 -521 -151 -472 -424 213 160 -390 -355 -543 -384 -186 110 111 ! 11 T -179 -484 101 -81 -516 -128 -299 -491 -41 -485 -393 94 -442 -95 -25 66 304 -446 -502 -434 98 -86 -193 110 111 E -333 -481 131 266 -513 -431 -296 -488 72 -243 -389 -46 -27 54 24 -70 -99 -443 176 -102 49 183 -163 110 111 E -33 -481 150 227 -513 -202 86 -488 25 -287 -109 -294 -440 199 -81 48 -176 -443 -499 -431 -54 216 -163 110 111 E -34 -480 206 184 -512 -73 -57 -193 6 -64 -20 -123 -440 158 -305 -22 -42 -443 -1 -431 54 174 -115 110 111 L -685 -620 -926 -868 -48 -914 -778 154 -851 284 45 -887 -803 -718 -796 -857 -668 45 -616 -642 -908 -810 -537 110 111 K 0 -466 -153 92 43 -435 -302 -181 218 -44 -376 -44 -444 -258 176 -9 -329 -111 17 -26 -103 -43 -108 110 111 D -13 -484 230 150 -516 -208 -300 -491 -38 -252 -23 -4 -76 152 76 -189 0 -446 -502 -434 121 151 -141 110 111 L 35 -344 -595 -118 148 -516 130 114 -195 175 -39 -480 -521 -453 -169 -424 -38 15 -390 132 -542 -248 -165 69 43 F -219 72 -791 -737 435 -733 -565 -156 -702 -75 -41 -688 -704 -627 -668 -649 -558 -421 -495 -102 -744 -694 -449 110 111 S -9 -481 -318 68 -513 155 -297 -198 93 -482 -389 -24 -440 57 24 179 -88 -175 -499 -134 -183 64 -131 110 111 ! 21 Q -122 -481 -29 107 -146 -66 -59 -488 133 -482 -390 95 147 212 -305 -31 9 -202 -499 -134 27 148 -119 110 111 F -5 133 -167 -85 292 -215 39 57 -448 -195 -271 -51 -512 -44 -177 -412 -353 -10 20 260 -114 -69 -143 110 111 G -56 -430 -443 -180 -28 336 -415 -410 -428 -228 -370 -57 28 -407 -458 -194 -396 -393 -487 -8 -265 -268 -223 110 111 P -38 -481 -15 99 -143 79 27 -178 81 -149 -389 -53 199 11 3 -29 -168 -62 -499 -431 -32 65 -61 110 111 I -361 -18 -159 -197 65 -516 -403 276 -90 -99 -39 -480 -171 -453 -471 -61 -183 213 -390 -110 -307 -297 -172 110 111 K -68 -18 -343 103 -460 -217 -311 52 156 0 27 -51 -452 -26 37 -193 30 139 -471 -413 -209 52 -90 110 111 S -122 -480 150 75 -512 -122 -45 -95 -132 -242 -59 90 -440 -101 52 180 6 -49 -499 -13 122 6 -87 110 111 I 126 222 -594 -530 80 -228 -66 189 -197 -23 -264 -150 -521 -453 -63 -64 -158 151 -390 -101 -389 -500 -141 110 111 K -191 -480 14 43 -152 -431 -60 -190 170 1 -389 68 -150 23 142 -19 -88 37 -13 -26 39 35 -67 110 111 V -128 -345 -590 -178 -116 -515 -52 181 -200 117 187 -149 -71 -451 -166 -198 -355 219 -390 -356 -387 -284 -159 110 111 ! 31 I -130 73 -590 -200 -120 -515 -53 168 41 -7 232 -478 10 -451 -14 23 -158 140 -390 -2 -538 -297 -120 110 111 K -360 -471 -362 -18 -79 -221 -68 -28 113 -91 0 83 46 -127 110 -208 30 -71 -24 101 -157 -61 -87 110 111 D -395 -543 255 -143 -575 -223 -24 -227 -47 -544 -112 -5 -215 -80 -220 -261 -389 -254 -561 -493 135 -118 -249 108 111 R -46 -412 -57 -74 -444 -136 -229 -128 144 -414 78 -226 160 40 198 46 -77 -133 -431 -54 -135 -29 -93 36 42 E 26 -445 -106 148 -109 -29 -262 -73 37 -124 -354 127 -406 138 -99 14 5 4 -464 -88 1 144 -56 102 111 T -306 -453 44 -235 -485 -169 5 -155 39 -231 -362 98 -125 -72 -106 -36 315 -415 -471 -403 69 -172 -151 106 111 G -95 -459 26 -49 -491 267 -19 -143 81 -256 -76 85 -418 -76 0 -81 -137 -421 -477 -409 53 -60 -128 107 111 R -155 -461 -121 -63 -124 -112 -23 -468 183 -147 -54 -32 13 129 222 24 -143 -183 -480 -103 -80 11 -86 108 111 S -88 89 -326 -271 -122 -212 59 -416 -65 -130 9 18 143 -256 8 257 -18 -386 -459 -400 -167 -265 -125 108 111 K -326 -472 -60 -256 -155 -189 3 -479 248 -109 -381 -113 -32 -90 266 -150 -66 -194 -491 -105 -85 -191 -136 108 111 ! 41 G -443 -576 -117 -350 -612 348 -56 -190 -132 -260 -489 -44 -26 -338 -55 -429 -435 -542 -584 -527 -83 -345 -264 109 111 F -361 -10 -180 -531 319 -516 48 -109 -100 -186 139 -480 -521 -81 -472 -424 -27 -37 17 302 -318 -356 -218 110 111 A 256 234 -771 -806 -763 262 -697 -745 -766 -772 -674 -603 -599 -708 -724 -202 -476 -221 -785 -785 -693 -768 -487 110 111 F -190 -356 -608 -545 408 -528 -412 -140 -505 -186 -275 -493 -533 -467 -485 -203 -79 -78 -395 198 -555 -515 -293 110 111 V -213 124 -824 -793 -578 -811 -828 193 -793 -99 -444 -777 -784 -793 -814 -751 -552 334 -761 -705 -802 -793 -505 110 111 E -117 -481 12 234 -513 -431 -52 -65 42 -257 -390 61 -440 -22 16 0 145 -207 -499 -109 35 134 -121 110 111 F -793 -684 -830 -866 405 -818 -436 -679 -822 -609 78 -679 -804 -693 -758 -743 -778 -696 -361 305 -761 -799 -638 110 111 E -64 -481 83 200 -165 -216 86 -113 116 -242 -390 -49 -8 22 -149 -24 73 -58 -499 -431 22 131 -77 110 111 D -334 -481 204 42 -513 -189 -44 -488 36 -483 -390 199 -441 -28 -134 127 118 -198 -500 -431 202 14 -172 110 111 E -67 -483 -182 176 -515 -191 159 -198 77 -47 -65 -122 119 49 -70 -2 -90 1 -501 -31 -154 126 -69 110 111 ! 51 E 23 -481 120 230 -513 -156 -49 -165 -80 -249 -79 -43 -69 -103 102 40 -328 -64 -3 -431 45 100 -95 74 44 D 40 68 245 114 -141 -434 -50 -181 -261 -470 -65 -39 -177 -2 -311 113 -84 -58 -492 -28 114 68 -117 110 111 A 283 -345 -171 -526 -99 -515 -402 -76 -487 -78 186 -478 -521 -146 -179 -14 -34 41 -391 -356 -312 -378 -190 110 111 E 56 -481 122 144 -513 -161 -44 -38 123 -163 -390 32 -440 127 -12 -322 74 -193 -499 -431 80 137 -108 110 111 K 67 -481 92 29 -139 -431 -45 -193 220 -168 -63 81 -440 -102 72 -1 -162 -113 -499 -102 87 -22 -92 110 111 A 340 85 -769 -742 -553 -633 -669 -7 -718 -246 -443 -660 -672 -688 -707 -226 -499 -1 -658 -620 -719 -721 -418 110 111 I -205 -345 -595 -532 -115 -516 -403 224 40 148 118 -481 -172 -49 -128 -213 -356 143 -390 -94 -542 -344 -177 110 111 D 52 -490 166 138 -522 -440 -305 -115 23 -491 -398 -51 -449 119 105 38 -336 -118 -508 -52 65 131 -152 110 111 A 125 -24 -151 133 -505 -27 -36 -481 90 -108 -382 76 -433 86 -4 3 37 -204 27 -423 -46 115 -94 109 111 L -69 79 -573 -48 51 -213 -399 -297 -13 210 282 -143 -518 -442 -94 -421 -169 -39 -392 48 -375 -201 -151 109 111 ! 61 N -182 -481 161 -76 -52 -114 -42 -488 -130 -483 -390 316 -80 145 -139 -26 -328 -443 -500 -20 232 10 -166 110 111 G -190 -490 -155 -6 -160 290 148 -497 2 -491 -399 87 -449 -117 -314 -170 -77 -452 -508 -120 -43 -49 -194 110 111 K -69 -471 -75 -143 81 -60 -56 24 168 -258 79 -300 -443 78 40 -23 128 -119 -492 101 -179 -57 -74 -7 489 E -335 -471 33 136 -156 -198 -301 46 125 6 25 -117 0 48 -152 -112 26 9 -3 45 -36 102 -54 110 111 L -362 -345 -96 -210 234 -119 -402 139 -171 132 -41 -168 -76 -450 -469 -215 -106 118 -391 39 -129 -303 -121 110 111 G -67 -55 116 26 -133 118 -297 -191 13 -69 128 141 -207 59 74 -113 -190 -443 -499 12 127 39 -67 110 111 G -183 -483 15 -265 -515 290 -58 -490 -134 -243 -391 147 -442 -32 -63 58 -168 -445 -501 -433 76 -174 -182 110 111 R -334 120 -64 -81 -161 -431 156 -488 205 -243 -390 60 -441 26 243 -57 -28 -208 -500 -135 -6 -39 -147 110 111 K 9 55 -147 73 -162 -432 -298 -4 139 -262 -389 33 101 -35 84 -105 72 60 -499 -431 -64 30 -80 110 111 L -133 -348 -29 -18 -343 -206 -399 194 -473 174 140 -469 -177 -440 -159 -199 -157 132 -393 -358 -232 -182 -140 110 111 ! 71 R -120 -482 -27 -31 -514 -434 99 -204 162 -43 66 -137 -25 -22 185 -111 -42 36 7 30 -78 -28 -79 110 111 V -192 121 -153 -164 -399 -467 -341 172 20 -148 -311 -360 -81 -111 -74 -194 42 268 -432 -386 -249 -144 -137 27 333 * 334 52 311 383 323 387 73 305 384 395 99 263 162 178 261 289 266 380 18 166 0 0 0 |
!!AA_PROFILE 1.0 (Peptide) HMMCONVERT v2.1.1 Length: 72 rrm|| Profile converted from a profile HMM using HMMER v2.1.1 emulation. Compugen XSW extended profile format. Use -model=xsw.model -nonor -noave -gapop=10 -gapext=1 -qgapop=10 -qgapext=1 with om on the Compugen BIC to get the closest approximation to HMMER bit scores. WARNING: There is a loss of information in this conversion. Neither the scores nor even the rank order of hits will be precisely preserved in a comparison of HMMER hmmsearch to GCG profilesearch. The profile score is an approximation of the (single-hit) HMMER score. Cons A C D E F G H I K L M N P Q R S T V W Y B Z X Gap Len QGap Qlen .. L -124 -37 -822 -785 -531 -801 -771 237 -777 225 -68 -766 -770 -752 -782 -735 -555 152 -698 -664 -796 -772 -458 100 100 100 100 F -364 -346 -598 -534 351 -213 -404 -83 -206 -126 -267 -482 -523 -456 -474 -198 -157 -148 -390 343 -544 -504 -260 110 111 116 137 V -557 83 -827 -796 -564 -815 -825 242 -795 -46 -54 -781 -785 -788 -813 -755 -556 312 -748 -700 -806 -793 -517 110 111 116 137 G -115 -480 -157 -263 -148 276 -297 -185 98 -481 -389 73 -440 -12 78 -21 -102 -442 -498 -106 -51 -166 -155 110 111 116 137 N -524 -704 43 -354 -729 176 -459 -717 -468 -705 -631 362 -165 -126 -85 -128 -529 -665 -723 -29 190 -265 -343 110 111 116 137 L -692 -626 -932 -873 -43 -920 -780 79 -856 304 -78 -894 -806 -720 -798 -864 -675 -2 -616 -644 -914 -813 -549 110 111 116 137 P -1 -530 17 -298 -569 -228 -53 -545 -162 -540 -449 138 312 -302 -366 77 96 -498 -557 -486 73 -300 -222 28 331 116 137 P -333 -480 -81 53 78 -431 56 -487 13 -109 -389 -61 168 52 17 -17 28 -213 230 202 -71 52 -101 110 111 116 137 D -38 -480 217 134 -143 3 -41 -193 -37 -482 -389 125 -440 -108 -67 28 4 -195 -499 38 175 39 -104 110 111 116 137 T 44 187 -596 -532 -126 -130 -403 131 -185 -29 153 -481 -521 -151 -472 -424 213 160 -390 -355 -543 -384 -186 110 111 116 137 ! 11 T -179 -484 101 -81 -516 -128 -299 -491 -41 -485 -393 94 -442 -95 -25 66 304 -446 -502 -434 98 -86 -193 110 111 116 137 E -333 -481 131 266 -513 -431 -296 -488 72 -243 -389 -46 -27 54 24 -70 -99 -443 176 -102 49 183 -163 110 111 116 137 E -33 -481 150 227 -513 -202 86 -488 25 -287 -109 -294 -440 199 -81 48 -176 -443 -499 -431 -54 216 -163 110 111 116 137 E -34 -480 206 184 -512 -73 -57 -193 6 -64 -20 -123 -440 158 -305 -22 -42 -443 -1 -431 54 174 -115 110 111 116 137 L -685 -620 -926 -868 -48 -914 -778 154 -851 284 45 -887 -803 -718 -796 -857 -668 45 -616 -642 -908 -810 -537 110 111 116 137 K 0 -466 -153 92 43 -435 -302 -181 218 -44 -376 -44 -444 -258 176 -9 -329 -111 17 -26 -103 -43 -108 110 111 116 137 D -13 -484 230 150 -516 -208 -300 -491 -38 -252 -23 -4 -76 152 76 -189 0 -446 -502 -434 121 151 -141 110 111 116 137 L 35 -344 -595 -118 148 -516 130 114 -195 175 -39 -480 -521 -453 -169 -424 -38 15 -390 132 -542 -248 -165 69 43 116 137 F -219 72 -791 -737 435 -733 -565 -156 -702 -75 -41 -688 -704 -627 -668 -649 -558 -421 -495 -102 -744 -694 -449 110 111 116 137 S -9 -481 -318 68 -513 155 -297 -198 93 -482 -389 -24 -440 57 24 179 -88 -175 -499 -134 -183 64 -131 110 111 116 137 ! 21 Q -122 -481 -29 107 -146 -66 -59 -488 133 -482 -390 95 147 212 -305 -31 9 -202 -499 -134 27 148 -119 110 111 116 137 F -5 133 -167 -85 292 -215 39 57 -448 -195 -271 -51 -512 -44 -177 -412 -353 -10 20 260 -114 -69 -143 110 111 116 137 G -56 -430 -443 -180 -28 336 -415 -410 -428 -228 -370 -57 28 -407 -458 -194 -396 -393 -487 -8 -265 -268 -223 110 111 116 137 P -38 -481 -15 99 -143 79 27 -178 81 -149 -389 -53 199 11 3 -29 -168 -62 -499 -431 -32 65 -61 110 111 116 137 I -361 -18 -159 -197 65 -516 -403 276 -90 -99 -39 -480 -171 -453 -471 -61 -183 213 -390 -110 -307 -297 -172 110 111 116 137 K -68 -18 -343 103 -460 -217 -311 52 156 0 27 -51 -452 -26 37 -193 30 139 -471 -413 -209 52 -90 110 111 116 137 S -122 -480 150 75 -512 -122 -45 -95 -132 -242 -59 90 -440 -101 52 180 6 -49 -499 -13 122 6 -87 110 111 116 137 I 126 222 -594 -530 80 -228 -66 189 -197 -23 -264 -150 -521 -453 -63 -64 -158 151 -390 -101 -389 -500 -141 110 111 116 137 K -191 -480 14 43 -152 -431 -60 -190 170 1 -389 68 -150 23 142 -19 -88 37 -13 -26 39 35 -67 110 111 116 137 V -128 -345 -590 -178 -116 -515 -52 181 -200 117 187 -149 -71 -451 -166 -198 -355 219 -390 -356 -387 -284 -159 110 111 116 137 ! 31 I -130 73 -590 -200 -120 -515 -53 168 41 -7 232 -478 10 -451 -14 23 -158 140 -390 -2 -538 -297 -120 110 111 116 137 K -360 -471 -362 -18 -79 -221 -68 -28 113 -91 0 83 46 -127 110 -208 30 -71 -24 101 -157 -61 -87 110 111 116 137 D -395 -543 255 -143 -575 -223 -24 -227 -47 -544 -112 -5 -215 -80 -220 -261 -389 -254 -561 -493 135 -118 -249 108 111 18 137 R -46 -412 -57 -74 -444 -136 -229 -128 144 -414 78 -226 160 40 198 46 -77 -133 -431 -54 -135 -29 -93 36 42 44 11 E 26 -445 -106 148 -109 -29 -262 -73 37 -124 -354 127 -406 138 -99 14 5 4 -464 -88 1 144 -56 102 111 118 84 T -306 -453 44 -235 -485 -169 5 -155 39 -231 -362 98 -125 -72 -106 -36 315 -415 -471 -403 69 -172 -151 106 111 138 34 G -95 -459 26 -49 -491 267 -19 -143 81 -256 -76 85 -418 -76 0 -81 -137 -421 -477 -409 53 -60 -128 107 111 136 40 R -155 -461 -121 -63 -124 -112 -23 -468 183 -147 -54 -32 13 129 222 24 -143 -183 -480 -103 -80 11 -86 108 111 144 25 S -88 89 -326 -271 -122 -212 59 -416 -65 -130 9 18 143 -256 8 257 -18 -386 -459 -400 -167 -265 -125 108 111 134 49 K -326 -472 -60 -256 -155 -189 3 -479 248 -109 -381 -113 -32 -90 266 -150 -66 -194 -491 -105 -85 -191 -136 108 111 122 93 ! 41 G -443 -576 -117 -350 -612 348 -56 -190 -132 -260 -489 -44 -26 -338 -55 -429 -435 -542 -584 -527 -83 -345 -264 109 111 91 326 F -361 -10 -180 -531 319 -516 48 -109 -100 -186 139 -480 -521 -81 -472 -424 -27 -37 17 302 -318 -356 -218 110 111 116 137 A 256 234 -771 -806 -763 262 -697 -745 -766 -772 -674 -603 -599 -708 -724 -202 -476 -221 -785 -785 -693 -768 -487 110 111 116 137 F -190 -356 -608 -545 408 -528 -412 -140 -505 -186 -275 -493 -533 -467 -485 -203 -79 -78 -395 198 -555 -515 -293 110 111 116 137 V -213 124 -824 -793 -578 -811 -828 193 -793 -99 -444 -777 -784 -793 -814 -751 -552 334 -761 -705 -802 -793 -505 110 111 116 137 E -117 -481 12 234 -513 -431 -52 -65 42 -257 -390 61 -440 -22 16 0 145 -207 -499 -109 35 134 -121 110 111 116 137 F -793 -684 -830 -866 405 -818 -436 -679 -822 -609 78 -679 -804 -693 -758 -743 -778 -696 -361 305 -761 -799 -638 110 111 116 137 E -64 -481 83 200 -165 -216 86 -113 116 -242 -390 -49 -8 22 -149 -24 73 -58 -499 -431 22 131 -77 110 111 116 137 D -334 -481 204 42 -513 -189 -44 -488 36 -483 -390 199 -441 -28 -134 127 118 -198 -500 -431 202 14 -172 110 111 116 137 E -67 -483 -182 176 -515 -191 159 -198 77 -47 -65 -122 119 49 -70 -2 -90 1 -501 -31 -154 126 -69 110 111 116 137 ! 51 E 23 -481 120 230 -513 -156 -49 -165 -80 -249 -79 -43 -69 -103 102 40 -328 -64 -3 -431 45 100 -95 74 44 116 137 D 40 68 245 114 -141 -434 -50 -181 -261 -470 -65 -39 -177 -2 -311 113 -84 -58 -492 -28 114 68 -117 110 111 116 137 A 283 -345 -171 -526 -99 -515 -402 -76 -487 -78 186 -478 -521 -146 -179 -14 -34 41 -391 -356 -312 -378 -190 110 111 116 137 E 56 -481 122 144 -513 -161 -44 -38 123 -163 -390 32 -440 127 -12 -322 74 -193 -499 -431 80 137 -108 110 111 116 137 K 67 -481 92 29 -139 -431 -45 -193 220 -168 -63 81 -440 -102 72 -1 -162 -113 -499 -102 87 -22 -92 110 111 116 137 A 340 85 -769 -742 -553 -633 -669 -7 -718 -246 -443 -660 -672 -688 -707 -226 -499 -1 -658 -620 -719 -721 -418 110 111 116 137 I -205 -345 -595 -532 -115 -516 -403 224 40 148 118 -481 -172 -49 -128 -213 -356 143 -390 -94 -542 -344 -177 110 111 116 137 D 52 -490 166 138 -522 -440 -305 -115 23 -491 -398 -51 -449 119 105 38 -336 -118 -508 -52 65 131 -152 110 111 116 137 A 125 -24 -151 133 -505 -27 -36 -481 90 -108 -382 76 -433 86 -4 3 37 -204 27 -423 -46 115 -94 109 111 33 137 L -69 79 -573 -48 51 -213 -399 -297 -13 210 282 -143 -518 -442 -94 -421 -169 -39 -392 48 -375 -201 -151 109 111 91 325 ! 61 N -182 -481 161 -76 -52 -114 -42 -488 -130 -483 -390 316 -80 145 -139 -26 -328 -443 -500 -20 232 10 -166 110 111 116 137 G -190 -490 -155 -6 -160 290 148 -497 2 -491 -399 87 -449 -117 -314 -170 -77 -452 -508 -120 -43 -49 -194 110 111 116 137 K -69 -471 -75 -143 81 -60 -56 24 168 -258 79 -300 -443 78 40 -23 128 -119 -492 101 -179 -57 -74 -7 489 115 137 E -335 -471 33 136 -156 -198 -301 46 125 6 25 -117 0 48 -152 -112 26 9 -3 45 -36 102 -54 110 111 116 137 L -362 -345 -96 -210 234 -119 -402 139 -171 132 -41 -168 -76 -450 -469 -215 -106 118 -391 39 -129 -303 -121 110 111 116 137 G -67 -55 116 26 -133 118 -297 -191 13 -69 128 141 -207 59 74 -113 -190 -443 -499 12 127 39 -67 110 111 116 137 G -183 -483 15 -265 -515 290 -58 -490 -134 -243 -391 147 -442 -32 -63 58 -168 -445 -501 -433 76 -174 -182 110 111 116 137 R -334 120 -64 -81 -161 -431 156 -488 205 -243 -390 60 -441 26 243 -57 -28 -208 -500 -135 -6 -39 -147 110 111 116 137 K 9 55 -147 73 -162 -432 -298 -4 139 -262 -389 33 101 -35 84 -105 72 60 -499 -431 -64 30 -80 110 111 116 137 L -133 -348 -29 -18 -343 -206 -399 194 -473 174 140 -469 -177 -440 -159 -199 -157 132 -393 -358 -232 -182 -140 110 111 116 137 ! 71 R -120 -482 -27 -31 -514 -434 99 -204 162 -43 66 -137 -25 -22 185 -111 -42 36 7 30 -78 -28 -79 110 111 116 137 V -192 121 -153 -164 -399 -467 -341 172 20 -148 -311 -360 -81 -111 -74 -194 42 268 -432 -386 -249 -144 -137 27 333 116 137 * 334 52 311 383 323 387 73 305 384 395 99 263 162 178 261 289 266 380 18 166 0 0 0 |
Program name | Description |
---|---|
ealistat | Statistics for multiple alignment files |
ehmmalign | Align sequences with an HMM |
ehmmbuild | Build HMM |
ehmmcalibrate | Calibrate a hidden Markov model |
ehmmemit | Extract HMM sequences |
ehmmfetch | Extract HMM from a database |
ehmmindex | Index an HMM database |
ehmmpfam | Align single sequence with an HMM |
ehmmsearch | Search sequence database with an HMM |
Although we take every care to ensure that the results of the EMBOSS version are identical to those from the original package, we recommend that you check your inputs give the same results in both versions before publication.
Please report all bugs in the EMBOSS version to the EMBOSS bug team, not to the original author.