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Packages that use DistributionTrainerContext | |
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org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
Uses of DistributionTrainerContext in org.biojava.bio.dist |
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Classes in org.biojava.bio.dist that implement DistributionTrainerContext | |
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class |
SimpleDistributionTrainerContext
A no-frills implementation of DistributionTrainerContext. |
Methods in org.biojava.bio.dist with parameters of type DistributionTrainerContext | |
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void |
SimpleDistributionTrainer.addCount(DistributionTrainerContext dtc,
AtomicSymbol sym,
double count)
Deprecated. |
void |
SimpleDistribution.Trainer.addCount(DistributionTrainerContext dtc,
AtomicSymbol sym,
double times)
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void |
IgnoreCountsTrainer.addCount(DistributionTrainerContext dtc,
AtomicSymbol sym,
double times)
|
void |
DistributionTrainer.addCount(DistributionTrainerContext dtc,
AtomicSymbol sym,
double times)
Registers that sym was counted in this state. |
void |
SimpleDistributionTrainer.clearCounts(DistributionTrainerContext dtc)
Deprecated. |
void |
SimpleDistribution.Trainer.clearCounts(DistributionTrainerContext dtc)
|
void |
IgnoreCountsTrainer.clearCounts(DistributionTrainerContext dtc)
|
void |
DistributionTrainer.clearCounts(DistributionTrainerContext dtc)
Clears all of the counts to zero. |
double |
SimpleDistributionTrainer.getCount(DistributionTrainerContext dtc,
AtomicSymbol sym)
Deprecated. |
double |
SimpleDistribution.Trainer.getCount(DistributionTrainerContext dtc,
AtomicSymbol sym)
|
double |
IgnoreCountsTrainer.getCount(DistributionTrainerContext dtc,
AtomicSymbol sym)
|
double |
DistributionTrainer.getCount(DistributionTrainerContext dtc,
AtomicSymbol sym)
Get the current count for this state. |
void |
UntrainableDistribution.registerWithTrainer(DistributionTrainerContext dtc)
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void |
UniformDistribution.registerWithTrainer(DistributionTrainerContext dtc)
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void |
TranslatedDistribution.registerWithTrainer(DistributionTrainerContext dtc)
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void |
SimpleDistribution.registerWithTrainer(DistributionTrainerContext dtc)
Register an SimpleDistribution.Trainer instance as the trainer for this distribution. |
void |
PairDistribution.registerWithTrainer(DistributionTrainerContext dtc)
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void |
GapDistribution.registerWithTrainer(DistributionTrainerContext dtc)
|
void |
Distribution.registerWithTrainer(DistributionTrainerContext dtc)
Register this distribution with a training context. |
void |
AbstractOrderNDistribution.registerWithTrainer(DistributionTrainerContext dtc)
|
void |
AbstractDistribution.registerWithTrainer(DistributionTrainerContext dtc)
Register an IgnoreCountsTrainer instance as the trainer for this distribution. |
void |
SimpleDistributionTrainer.train(DistributionTrainerContext dtc,
double weight)
Deprecated. |
void |
SimpleDistribution.Trainer.train(DistributionTrainerContext dtc,
double weight)
|
void |
IgnoreCountsTrainer.train(DistributionTrainerContext dtc,
double weight)
|
void |
DistributionTrainer.train(DistributionTrainerContext dtc,
double weight)
Trains the Distribution, given a null model. |
protected void |
SimpleDistribution.Trainer.trainImpl(DistributionTrainerContext dtc,
double weight)
|
Uses of DistributionTrainerContext in org.biojava.bio.dp |
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Subinterfaces of DistributionTrainerContext in org.biojava.bio.dp | |
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interface |
ModelTrainer
Encapsulates the training of an entire model. |
Classes in org.biojava.bio.dp that implement DistributionTrainerContext | |
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class |
SimpleModelTrainer
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