org.biojava.bio.symbol
Class SimpleGappedSymbolList.Block
java.lang.Object
org.biojava.bio.symbol.SimpleGappedSymbolList.Block
- All Implemented Interfaces:
- Serializable
- Enclosing class:
- SimpleGappedSymbolList
protected static final class SimpleGappedSymbolList.Block
- extends Object
- implements Serializable
An aligned block.
The alignment is actualy stoored as a list of these objects. Each block is
contiguous with the next in the source fields, but may be gapped in the
view fields.
- Author:
- Matthew Pocock
- See Also:
- Serialized Form
sourceStart
public int sourceStart
sourceEnd
public int sourceEnd
viewStart
public int viewStart
viewEnd
public int viewEnd
SimpleGappedSymbolList.Block
public SimpleGappedSymbolList.Block(int sourceStart,
int sourceEnd,
int viewStart,
int viewEnd)
SimpleGappedSymbolList.Block
public SimpleGappedSymbolList.Block(SimpleGappedSymbolList.Block block)
toString
public String toString()
- Overrides:
toString
in class Object
isSane
public boolean isSane()