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java.lang.Objectorg.biojava.bio.seq.io.StreamWriter
public class StreamWriter
Writes all of the sequences from a SequenceIterator to a stream with a particular format.
This can be wired from a StreamReader to make a simple file-format conversion utility, or can be used to write out the sequences in a database to disk.
More functionality is offered by RichStreamWriter
,
Use of this interface is prefered.
RichStreamWriter
Constructor Summary | |
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StreamWriter(OutputStream os,
SequenceFormat format)
Generate a new StreamWriter to the stream os and using format. |
Method Summary | |
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void |
writeStream(SequenceIterator ss)
Write each of the sequences in ss to the stream in the given format. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public StreamWriter(OutputStream os, SequenceFormat format)
os
- the OutputStream to write toformat
- the SequenceFormat to write withMethod Detail |
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public void writeStream(SequenceIterator ss) throws IOException
ss
- the SequenceIterator to loop over
IOException
- if the stream has any problems
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