Uses of Package
org.biojavax.bio.phylo.io.nexus

Packages that use org.biojavax.bio.phylo.io.nexus
org.biojavax.bio.phylo Classes to support phlylogeny objects. 
org.biojavax.bio.phylo.io.nexus Classes to support the I/O of Nexus files. 
 

Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo
CharactersBlock
          Represents Nexus characters blocks.
TaxaBlock
          Represents Nexus taxa blocks.
 

Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo.io.nexus
CharactersBlock
          Represents Nexus characters blocks.
CharactersBlockBuilder
          Builds Nexus characters blocks.
CharactersBlockListener
          Listens to events that represent Nexus characters blocks.
CharactersBlockParser
          Parses Nexus characters blocks.
DataBlockListener
          Listens to events that represent Nexus data blocks.
DistancesBlockListener
          Listens to events that represent Nexus distances blocks.
NexusBlock
          Represents a Nexus block.
NexusBlock.Abstract
           
NexusBlockBuilder
          Builds a Nexus block from listening to events.
NexusBlockBuilder.Abstract
          This abstract version knows how to build and add comments.
NexusBlockListener
          Listens to events from NexusBlockParser objects to create objects.
NexusBlockParser
          Parses Nexus blocks.
NexusBlockParser.Abstract
          All block parsers should derive from this abstract parser.
NexusComment
          Represents a Nexus comment, possibly nested.
NexusFile
          Represents Nexus files.
NexusFileListener
          Listens to events fired by the Nexus parser.
NexusFileListener.Abstract
          Example abstract implementation which all others should extend.
NexusObject
          Represents general info about nexus objects.
TaxaBlockListener
          Listens to events that represent Nexus taxa blocks.
TreesBlock.NewickTreeString
          A simple representation of a Newick tree as a single string.
TreesBlockListener
          Listens to events that represent Nexus trees blocks.