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Package ncsa.hdf.hdf5lib |
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Class ncsa.hdf.hdf5lib.H5 extends java.lang.Object implements Serializable |
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serialVersionUID: 6129888282117053288L
Package ncsa.hdf.hdf5lib.exceptions |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5AtomException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5AttributeException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5BtreeException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5DataFiltersException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5DatasetInterfaceException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5DataStorageException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5DatatypeInterfaceException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5Exception extends java.lang.Exception implements Serializable |
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Serialized Fields |
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java.lang.String detailMessage
Class ncsa.hdf.hdf5lib.exceptions.HDF5ExternalFileListException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5FileInterfaceException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5FunctionArgumentException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5FunctionEntryExitException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5HeapException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5InternalErrorException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5JavaException extends HDF5Exception implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException extends HDF5Exception implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5LowLevelIOException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5MetaDataCacheException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5ObjectHeaderException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5PropertyListInterfaceException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5ReferenceException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5ResourceUnavailableException extends HDF5LibraryException implements Serializable |
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Class ncsa.hdf.hdf5lib.exceptions.HDF5SymbolTableException extends HDF5LibraryException implements Serializable |
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Package ncsa.hdf.hdf5lib.structs |
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Class ncsa.hdf.hdf5lib.structs.H5_ih_info_t extends java.lang.Object implements Serializable |
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serialVersionUID: -142238015615462707L
Serialized Fields |
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long index_size
long heap_size
Class ncsa.hdf.hdf5lib.structs.H5A_info_t extends java.lang.Object implements Serializable |
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serialVersionUID: 2791443594041667613L
Serialized Fields |
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boolean corder_valid
long corder
int cset
long data_size
Class ncsa.hdf.hdf5lib.structs.H5AC_cache_config_t extends java.lang.Object implements Serializable |
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serialVersionUID: -6748085696476149972L
Serialized Fields |
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int version
boolean rpt_fcn_enabled
boolean open_trace_file
boolean close_trace_file
java.lang.String trace_file_name
boolean evictions_enabled
boolean set_initial_size
long initial_size
double min_clean_fraction
long max_size
long min_size
long epoch_length
int incr_mode
double lower_hr_threshold
double increment
boolean apply_max_increment
long max_increment
int flash_incr_mode
double flash_multiple
double flash_threshold
int decr_mode
double upper_hr_threshold
double decrement
boolean apply_max_decrement
long max_decrement
int epochs_before_eviction
boolean apply_empty_reserve
double empty_reserve
int dirty_bytes_threshold
int metadata_write_strategy
Class ncsa.hdf.hdf5lib.structs.H5G_info_t extends java.lang.Object implements Serializable |
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serialVersionUID: -3746463015312132912L
Serialized Fields |
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int storage_type
long nlinks
long max_corder
boolean mounted
Class ncsa.hdf.hdf5lib.structs.H5L_info_t extends java.lang.Object implements Serializable |
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serialVersionUID: -4754320605310155033L
Serialized Fields |
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int type
boolean corder_valid
long corder
int cset
long address_val_size
Class ncsa.hdf.hdf5lib.structs.H5O_hdr_info_t extends java.lang.Object implements Serializable |
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serialVersionUID: 7883826382952577189L
Serialized Fields |
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int version
int nmesgs
int nchunks
int flags
long space_total
long space_meta
long space_mesg
long space_free
long mesg_present
long mesg_shared
Class ncsa.hdf.hdf5lib.structs.H5O_info_t extends java.lang.Object implements Serializable |
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serialVersionUID: 4691681163544054518L
Serialized Fields |
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long fileno
long addr
int type
int rc
long atime
long mtime
long ctime
long btime
long num_attrs
H5O_hdr_info_t hdr
H5_ih_info_t meta_size_obj
H5_ih_info_t meta_size_attr
Package ncsa.hdf.hdflib |
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Class ncsa.hdf.hdflib.HDFDeprecated extends HDFLibrary implements Serializable |
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Class ncsa.hdf.hdflib.HDFException extends java.lang.Exception implements Serializable |
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Serialized Fields |
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int HDFerror
java.lang.String msg
Class ncsa.hdf.hdflib.HDFJavaException extends HDFException implements Serializable |
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Serialized Fields |
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java.lang.String msg
Class ncsa.hdf.hdflib.HDFLibrary extends java.lang.Object implements Serializable |
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serialVersionUID: -1695429510319126910L
Class ncsa.hdf.hdflib.HDFLibraryException extends HDFException implements Serializable |
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Serialized Fields |
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int HDFerror
java.lang.String msg
Class ncsa.hdf.hdflib.HDFNotImplementedException extends HDFJavaException implements Serializable |
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Serialized Fields |
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java.lang.String msg
Package ncsa.hdf.object |
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Class ncsa.hdf.object.Attribute extends java.lang.Object implements Serializable |
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serialVersionUID: 2072473407027648309L
Serialized Fields |
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java.lang.String name
Datatype type
int rank
long[] dims
java.lang.Object value
boolean isUnsigned
boolean isScalar
Class ncsa.hdf.object.CompoundDS extends Dataset implements Serializable |
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serialVersionUID: -4880399929644095662L
Serialized Fields |
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int numberOfMembers
java.lang.String[] memberNames
int[] memberOrders
For example, a compound dataset COMP has members of A, B and C as
COMP { int A; float B[5]; double C[2][3]; }memberOrders is an integer array of {1, 5, 6} to indicate that member A has one element, member B has 5 elements, and member C has 6 elements.
java.lang.Object[] memberDims
The i-th element of the Object[] is an integer array (int[]) that contains the dimension sizes of the i-th member.
Datatype[] memberTypes
boolean[] isMemberSelected
If a member is selected, the read/write will perform on the member. Applications such as HDFView will only display the selected members of the compound dataset.
For example, if a compound dataset has four members String[] memberNames = {"X", "Y", "Z", "TIME"}; and boolean[] isMemberSelected = {true, false, false, true}; members "X" and "TIME" are selected for read and write.
Class ncsa.hdf.object.Dataset extends HObject implements Serializable |
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serialVersionUID: -3360885430038261178L
Serialized Fields |
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java.lang.Object data
int rank
long[] dims
long[] maxDims
long[] selectedDims
The select size must be less than or equal to the current dimension size. A subset of a rectangle selection is defined by the starting position and selected sizes.
For example, a 4 X 5 dataset
0, 1, 2, 3, 4 10, 11, 12, 13, 14 20, 21, 22, 23, 24 30, 31, 32, 33, 34 long[] dims = {4, 5}; long[] startDims = {1, 2}; long[] selectedDims = {3, 3}; then the following subset is selected by the startDims and selectedDims above 12, 13, 14 22, 23, 24 32, 33, 34
long[] startDims
int[] selectedIndex
selectedIndex[] is provied for two purpose:
long[] selectedStride
long[] chunkSize
java.lang.String compression
Datatype datatype
java.lang.String[] dimNames
boolean convertByteToString
boolean isDataLoaded
long nPoints
java.lang.Object originalBuf
java.lang.Object convertedBuf
For example, Suppose that the original data is an array of unsigned 16-bit short integers. Since Java does not support unsigned integer, the data is converted to an array of 32-bit singed integer. In that case, the converted buffer is the array of 32-bit singed integer.
boolean enumConverted
Class ncsa.hdf.object.Datatype extends HObject implements Serializable |
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serialVersionUID: -581324710549963177L
Serialized Fields |
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int datatypeClass
int datatypeSize
int datatypeOrder
int datatypeSign
java.lang.String enumMembers
Datatype baseType
long[] dims
Class ncsa.hdf.object.FileFormat extends java.io.File implements Serializable |
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serialVersionUID: -4700692313888420796L
Serialized Fields |
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int max_members
int start_members
int fid
java.lang.String fullFileName
boolean isReadOnly
Class ncsa.hdf.object.Group extends HObject implements Serializable |
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serialVersionUID: 3913174542591568052L
Serialized Fields |
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java.util.List<E> memberList
Group parent
int nMembersInFile
Class ncsa.hdf.object.HObject extends java.lang.Object implements Serializable |
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serialVersionUID: -1723666708199882519L
Serialized Fields |
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java.lang.String filename
FileFormat fileFormat
java.lang.String name
java.lang.String path
java.lang.String fullName
long[] oid
HDF4 objects are uniquely identified by a (ref_id, tag_id) pair. i.e.
oid[0]=tag, oid[1]=ref.
HDF5 objects are uniquely identified by an object reference.
java.lang.String linkTargetObjName
Class ncsa.hdf.object.ScalarDS extends Dataset implements Serializable |
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serialVersionUID: 8925371455928203981L
Serialized Fields |
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int interlace
double[] imageDataRange
byte[][] palette
The palette values are stored in a two-dimensional byte array and arrange by color components of red, green and blue. palette[][] = byte[3][256], where, palette[0][], palette[1][] and palette[2][] are the red, green and blue components respectively.
boolean isImage
boolean isTrueColor
boolean isText
boolean isUnsigned
boolean unsignedConverted
java.lang.Object fillValue
boolean isImageDisplay
boolean isDefaultImageOrder
boolean isFillValueConverted
Package ncsa.hdf.object.h4 |
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Class ncsa.hdf.object.h4.H4Datatype extends Datatype implements Serializable |
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serialVersionUID: -1342029403385521874L
Class ncsa.hdf.object.h4.H4File extends FileFormat implements Serializable |
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serialVersionUID: 8985533001471224030L
Serialized Fields |
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int flag
javax.swing.tree.DefaultMutableTreeNode rootNode
java.util.List<E> objList
int grid
boolean isNetCDF
int sdid
boolean showAll
Class ncsa.hdf.object.h4.H4GRImage extends ScalarDS implements Serializable |
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serialVersionUID: 1029672744963360976L
Serialized Fields |
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java.util.List<E> attributeList
int grid
int ncomp
int datatypeID
int nAttributes
Class ncsa.hdf.object.h4.H4Group extends Group implements Serializable |
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serialVersionUID: 3785240955078867900L
Serialized Fields |
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java.util.List<E> attributeList
int nAttributes
Class ncsa.hdf.object.h4.H4SDS extends ScalarDS implements Serializable |
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serialVersionUID: 2557157923292438696L
Serialized Fields |
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java.util.List<E> attributeList
int sdid
int datatypeID
int nAttributes
Class ncsa.hdf.object.h4.H4Vdata extends CompoundDS implements Serializable |
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serialVersionUID: -5978700886955419959L
Serialized Fields |
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java.util.List<E> attributeList
int numberOfRecords
int[] memberTIDs
int nAttributes
Package ncsa.hdf.object.h5 |
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Class ncsa.hdf.object.h5.H5CompoundDS extends CompoundDS implements Serializable |
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serialVersionUID: -5968625125574032736L
Serialized Fields |
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java.util.List<E> attributeList
int nAttributes
H5O_info_t obj_info
java.util.List<E> flatNameList
The nested names are separated by CompoundDs.separator. For example, if compound dataset "A" has the following nested structure,
A --> m01 A --> m02 A --> nest1 --> m11 A --> nest1 --> m12 A --> nest1 --> nest2 --> m21 A --> nest1 --> nest2 --> m22 i.e. A = { m01, m02, nest1{m11, m12, nest2{ m21, m22}}}The flatNameList of compound dataset "A" will be {m01, m02, nest1[m11, nest1[m12, nest1[nest2[m21, nest1[nest2[m22}
java.util.List<E> flatTypeList
boolean isExternal
Class ncsa.hdf.object.h5.H5Datatype extends Datatype implements Serializable |
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serialVersionUID: -750546422258749792L
Serialized Fields |
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java.util.List<E> attributeList
boolean isNamed
int nAttributes
H5O_info_t obj_info
boolean isVLEN
java.lang.String description
Class ncsa.hdf.object.h5.H5File extends FileFormat implements Serializable |
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serialVersionUID: 6247335559471526045L
Serialized Fields |
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int flag
int indexType
javax.swing.tree.DefaultMutableTreeNode rootNode
int[] libver
boolean attrFlag
Class ncsa.hdf.object.h5.H5Group extends Group implements Serializable |
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serialVersionUID: -951164512330444150L
Serialized Fields |
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java.util.List<E> attributeList
int nAttributes
H5O_info_t obj_info
Class ncsa.hdf.object.h5.H5Link extends HObject implements Serializable |
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serialVersionUID: -8137277460521594367L
Serialized Fields |
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H5O_info_t obj_info
Class ncsa.hdf.object.h5.H5ScalarDS extends ScalarDS implements Serializable |
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serialVersionUID: 2887517608230611642L
Serialized Fields |
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java.util.List<E> attributeList
byte[] paletteRefs
boolean isVLEN
boolean isEnum
boolean isExternal
boolean isArrayOfCompound
boolean isNativeDatatype
boolean isRegRef
int nAttributes
H5O_info_t obj_info
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