bio-0.5.1: A bioinformatics library

Bio.GFF3.SGD

Documentation

sortExons :: (Error e, MonadError e m) => [Feature] -> m [Feature]

geneSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)

geneSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc

noncodingSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)

noncodingSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc

geneCDS_SLM :: (Error e, MonadError e m) => FeatureHierSequences -> m (SeqLocMap Feature)