Bio.Alignment.Soap
- data SoapAlign = SA {}
- data SoapAlignMismatch = SAM {}
- refSeqPos :: SoapAlign -> SeqPos
- refCSeqLoc :: SoapAlign -> ContigSeqLoc
- refSeqLoc :: SoapAlign -> SeqLoc
- mismatchSeqPos :: SoapAlign -> SoapAlignMismatch -> SeqPos
- parse :: (Error e, MonadError e m) => ByteString -> m SoapAlign
- unparse :: SoapAlign -> ByteString
- parseMismatch :: (Error e, MonadError e m) => ByteString -> m SoapAlignMismatch
- unparseMismatch :: SoapAlignMismatch -> ByteString
- group :: [SoapAlign] -> [[SoapAlign]]
Documentation
data SoapAlign
Alignment output from SOAP
Constructors
SA | |
Fields
|
data SoapAlignMismatch
Constructors
SAM | |
refCSeqLoc :: SoapAlign -> ContigSeqLoc
mismatchSeqPos :: SoapAlign -> SoapAlignMismatch -> SeqPos
parse :: (Error e, MonadError e m) => ByteString -> m SoapAlign
unparse :: SoapAlign -> ByteString
parseMismatch :: (Error e, MonadError e m) => ByteString -> m SoapAlignMismatch