! | Bio.Sequence.SeqData, Bio.Sequence |
? | Bio.Sequence.SeqData |
Ala | Bio.Sequence.SeqData, Bio.Sequence |
Amino | Bio.Sequence.SeqData, Bio.Sequence |
appendHeader | Bio.Sequence.SeqData, Bio.Sequence |
Arg | Bio.Sequence.SeqData, Bio.Sequence |
Asn | Bio.Sequence.SeqData, Bio.Sequence |
Asp | Bio.Sequence.SeqData, Bio.Sequence |
Asx | Bio.Sequence.SeqData, Bio.Sequence |
b36 | Bio.Sequence.SFF_name |
bases | Bio.Sequence.SFF |
baseToFlowPos | Bio.Sequence.SFF |
castSeq | Bio.Sequence.SeqData |
castToAmino | Bio.Sequence.SeqData, Bio.Sequence |
castToNuc | Bio.Sequence.SeqData, Bio.Sequence |
clip_adapter_left | Bio.Sequence.SFF |
clip_adapter_right | Bio.Sequence.SFF |
clip_qual_left | Bio.Sequence.SFF |
clip_qual_right | Bio.Sequence.SFF |
CommonHeader | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
compact | Bio.Sequence.HashWord |
compl | Bio.Sequence.SeqData, Bio.Sequence |
complement | Bio.Sequence.HashWord |
contigous | Bio.Sequence.HashWord, Bio.Sequence |
convert | Bio.Sequence.SFF |
countSeqs | Bio.Sequence.Fasta |
cumulative_index | Bio.Sequence.SFF |
Cys | Bio.Sequence.SeqData, Bio.Sequence |
date | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
decCh | Bio.Sequence.SFF_name |
decode2Bit | Bio.Sequence.TwoBit, Bio.Sequence |
decode36 | Bio.Sequence.SFF_name |
decodeDate | Bio.Sequence.SFF_name |
decodeLocation | Bio.Sequence.SFF_name |
decodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
defragSeq | Bio.Sequence.SeqData, Bio.Sequence |
divMods | Bio.Sequence.SFF_name |
encode2Bit | Bio.Sequence.TwoBit |
encode36 | Bio.Sequence.SFF_name |
encodeDate | Bio.Sequence.SFF_name |
encodeLocation | Bio.Sequence.SFF_name |
encodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
encodeRegion | Bio.Sequence.SFF_name |
entropy | Bio.Sequence.Entropy, Bio.Sequence |
Flow | Bio.Sequence.SFF |
flow | Bio.Sequence.SFF |
flowgram | Bio.Sequence.SFF |
flowgram_fmt | Bio.Sequence.SFF |
flowToBasePos | Bio.Sequence.SFF |
flow_data | Bio.Sequence.SFF |
flow_index | Bio.Sequence.SFF |
flow_length | Bio.Sequence.SFF |
fromIUPAC | Bio.Sequence.SeqData, Bio.Sequence |
fromStr | Bio.Sequence.SeqData, Bio.Sequence |
gapped | Bio.Sequence.HashWord |
genkeys | Bio.Sequence.HashWord |
Gln | Bio.Sequence.SeqData, Bio.Sequence |
Glu | Bio.Sequence.SeqData, Bio.Sequence |
Glx | Bio.Sequence.SeqData, Bio.Sequence |
Gly | Bio.Sequence.SeqData, Bio.Sequence |
hash | Bio.Sequence.HashWord, Bio.Sequence |
hashes | Bio.Sequence.HashWord, Bio.Sequence |
HashF | Bio.Sequence.HashWord, Bio.Sequence |
hasqual | Bio.Sequence.SeqData |
HF | Bio.Sequence.HashWord, Bio.Sequence |
His | Bio.Sequence.SeqData, Bio.Sequence |
hRead2Bit | Bio.Sequence.TwoBit, Bio.Sequence |
hReadFasta | Bio.Sequence.Fasta, Bio.Sequence |
hReadFastQ | Bio.Sequence.FastQ, Bio.Sequence |
hReadIllumina | Bio.Sequence.FastQ, Bio.Sequence |
hReadPhd | Bio.Sequence.Phd, Bio.Sequence |
hReadSangerQ | Bio.Sequence.FastQ, Bio.Sequence |
hWrite2Bit | Bio.Sequence.TwoBit |
hWriteFasta | Bio.Sequence.Fasta, Bio.Sequence |
hWriteFastaQual | Bio.Sequence.Fasta, Bio.Sequence |
hWriteFastQ | Bio.Sequence.FastQ, Bio.Sequence |
hWriteIllumina | Bio.Sequence.FastQ, Bio.Sequence |
hWriteQual | Bio.Sequence.Fasta, Bio.Sequence |
hWriteSangerQ | Bio.Sequence.FastQ, Bio.Sequence |
Ile | Bio.Sequence.SeqData, Bio.Sequence |
Index | Bio.Sequence.SFF |
index_length | Bio.Sequence.SFF |
index_offset | Bio.Sequence.SFF |
isN | Bio.Sequence.HashWord |
k2n | Bio.Sequence.HashWord |
k2n' | Bio.Sequence.HashWord |
key | Bio.Sequence.SFF |
key_length | Bio.Sequence.SFF |
ksort | Bio.Sequence.HashWord, Bio.Sequence |
KWords | Bio.Sequence.Entropy, Bio.Sequence |
kwords | Bio.Sequence.Entropy, Bio.Sequence |
Leu | Bio.Sequence.SeqData, Bio.Sequence |
Lys | Bio.Sequence.SeqData, Bio.Sequence |
main | Main |
masked_bases | Bio.Sequence.SFF |
Met | Bio.Sequence.SeqData, Bio.Sequence |
mkSeqs | Bio.Sequence.Fasta |
n2i' | Bio.Sequence.HashWord |
n2k | Bio.Sequence.HashWord |
name_length | Bio.Sequence.SFF |
Nuc | Bio.Sequence.SeqData, Bio.Sequence |
num_bases | Bio.Sequence.SFF |
num_reads | Bio.Sequence.SFF |
Offset | Bio.Sequence.SeqData, Bio.Sequence |
packFlows | Bio.Sequence.SFF |
parse | Bio.Sequence.FastQ |
Phe | Bio.Sequence.SeqData, Bio.Sequence |
Pro | Bio.Sequence.SeqData, Bio.Sequence |
putSeqLn | Bio.Sequence.SeqData |
Qual | Bio.Sequence.SeqData, Bio.Sequence.Fasta, Bio.Sequence.SFF, Bio.Sequence |
QualData | Bio.Sequence.SeqData, Bio.Sequence.SFF, Bio.Sequence |
quality | Bio.Sequence.SFF |
rbToSequence | Bio.Sequence.SFF |
rcontig | Bio.Sequence.HashWord, Bio.Sequence |
rcpacked | Bio.Sequence.HashWord, Bio.Sequence |
read2Bit | Bio.Sequence.TwoBit, Bio.Sequence |
ReadBlock | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
readFasta | Bio.Sequence.Fasta, Bio.Sequence |
readFastaQual | Bio.Sequence.Fasta, Bio.Sequence |
readFastQ | Bio.Sequence.FastQ, Bio.Sequence |
ReadHeader | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
readIllumina | Bio.Sequence.FastQ, Bio.Sequence |
ReadName | |
1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
readNuc | Bio.Sequence |
readPhd | Bio.Sequence.Phd, Bio.Sequence |
readProt | Bio.Sequence |
readQual | Bio.Sequence.Fasta, Bio.Sequence |
readSangerQ | Bio.Sequence.FastQ, Bio.Sequence |
readSFF | Bio.Sequence.SFF |
read_header | Bio.Sequence.SFF |
read_name | Bio.Sequence.SFF |
recoverSFF | Bio.Sequence.SFF |
region | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
revcompl | Bio.Sequence.SeqData, Bio.Sequence |
revcompl' | Bio.Sequence.SeqData, Bio.Sequence |
Seq | Bio.Sequence.SeqData, Bio.Sequence |
SeqData | Bio.Sequence.SeqData, Bio.Sequence.SFF, Bio.Sequence |
seqdata | Bio.Sequence.SeqData, Bio.Sequence |
seqheader | Bio.Sequence.SeqData, Bio.Sequence |
seqlabel | Bio.Sequence.SeqData, Bio.Sequence |
seqlength | Bio.Sequence.SeqData, Bio.Sequence |
seqmap | Bio.Sequence.SeqData, Bio.Sequence |
seqqual | Bio.Sequence.SeqData, Bio.Sequence |
seqToStr | Bio.Sequence.SeqData |
Sequence | Bio.Sequence.SeqData, Bio.Sequence |
Ser | Bio.Sequence.SeqData, Bio.Sequence |
setHeader | Bio.Sequence.SeqData, Bio.Sequence |
SFF | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
sffToSequence | Bio.Sequence.SFF |
Shape | Bio.Sequence.HashWord |
STP | Bio.Sequence.SeqData, Bio.Sequence |
test | Bio.Sequence.SFF |
Thr | Bio.Sequence.SeqData, Bio.Sequence |
time | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
toIUPAC | Bio.Sequence.SeqData, Bio.Sequence |
toStr | Bio.Sequence.SeqData, Bio.Sequence |
translate | Bio.Sequence.SeqData, Bio.Sequence |
trim | Bio.Sequence.SFF |
trimFlows | Bio.Sequence.SFF |
trimFromTo | Bio.Sequence.SFF |
trimKey | Bio.Sequence.SFF |
Trp | Bio.Sequence.SeqData, Bio.Sequence |
Tyr | Bio.Sequence.SeqData, Bio.Sequence |
Unknown | Bio.Sequence.SeqData, Bio.Sequence |
unpackFlows | Bio.Sequence.SFF |
unparse | Bio.Sequence.FastQ |
unval | Bio.Sequence.HashWord |
Val | Bio.Sequence.SeqData, Bio.Sequence |
val | Bio.Sequence.HashWord |
write2Bit | Bio.Sequence.TwoBit |
writeFasta | Bio.Sequence.Fasta, Bio.Sequence |
writeFastaQual | Bio.Sequence.Fasta, Bio.Sequence |
writeFastQ | Bio.Sequence.FastQ, Bio.Sequence |
writeIllumina | Bio.Sequence.FastQ, Bio.Sequence |
writeQual | Bio.Sequence.Fasta, Bio.Sequence |
writeSangerQ | Bio.Sequence.FastQ, Bio.Sequence |
writeSFF | Bio.Sequence.SFF |
writeSFF' | Bio.Sequence.SFF |
Xaa | Bio.Sequence.SeqData, Bio.Sequence |
Xle | Bio.Sequence.SeqData, Bio.Sequence |
x_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
y_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF |