EMBOSS: dichet


Program dichet

Function

Parse dictionary of heterogen groups

Description

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Usage

Here is a sample session with dichet:

% dichet

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Command line arguments

   Mandatory qualifiers (* if not always prompted):
  [-inf]               infile     Name of raw input file (dictionary of
                                  heterogen groups)
  [-dogrep]            bool       Search a directory of files with keywords?
  [-outf]              outfile    Name of output file
*  -path               string     Directory to search with keywords
*  -extn               string     Exension of files to search in above
                                  directory

   Optional qualifiers: (none)
   Advanced qualifiers: (none)
   General qualifiers:
  -help                bool       report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose


Mandatory qualifiers Allowed values Default
[-inf]
(Parameter 1)
Name of raw input file (dictionary of heterogen groups) Input file Required
[-dogrep]
(Parameter 2)
Search a directory of files with keywords? Yes/No No
[-outf]
(Parameter 3)
Name of output file Output file <sequence>.dichet
-path Directory to search with keywords Any string is accepted ./
-extn Exension of files to search in above directory Any string is accepted .ent
Optional qualifiers Allowed values Default
(none)
Advanced qualifiers Allowed values Default
(none)

Input file format

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Output file format

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Data files

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Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

See also

Program nameDescription
contactsReads coordinate files and writes contact files
interfaceReads coordinate files and writes inter-chain contact files
psiblastsRuns PSI-BLAST given scopalign alignments
scopalignGenerate alignments for SCOP families
seqsortRemoves ambiguities from a set of hits resulting from a database search
siggenGenerates a sparse protein signature
sigscanScans a sparse protein signature against swissprot

Author(s)

This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk) **************** EDIT HERE ****************

History

Written (date) - author. **************** EDIT HERE ****************

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments