Mandatory qualifiers |
Allowed values |
Default |
-idformat |
Entry format |
EMBL | (EMBL) | SWISS | (Swiss-Prot, SpTrEMBL, TrEMBLnew) | GB | (Genbank, DDBJ) |
|
SWISS |
-directory |
Database directory |
Any string is accepted |
. |
-filenames |
Wildcard database filename |
Any string is accepted |
*.dat |
[-dbname] (Parameter 1) |
Database name |
A string from 1 to 19 characters |
Required |
-release |
Release number |
A string up to 9 characters |
0.0 |
-date |
Index date |
Date string dd/mm/yy |
00/00/00 |
Optional qualifiers |
Allowed values |
Default |
(none) |
Advanced qualifiers |
Allowed values |
Default |
-fields |
Index fields |
acnum | (Accession number) | seqvn | (Sequence Version and GI) | des | (Description) | keyword | (Keywords) | taxon | (Taxonomy) |
|
acnum |
-exclude |
wildcard filename(s) to exclude |
Any string is accepted |
An empty string is accepted |
-indexdirectory |
Index directory |
Any string is accepted |
. |
-maxindex |
Maximum index length |
Integer 0 or more |
0 |
-sortoptions |
Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field |
Any string is accepted |
-T . -k 1,1 |
-[no]systemsort |
Use system sort utility |
Yes/No |
Yes |
-[no]cleanup |
Clean up temporary files |
Yes/No |
Yes |