org.biojava.bio.program.xff
Class XFFTools
java.lang.Object
org.biojava.bio.program.xff.XFFTools
- public class XFFTools
- extends java.lang.Object
Common functionality for manipulating XFF.
- Author:
- Matthew Pocock
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
XFFTools
public XFFTools()
annotateXFF
public static void annotateXFF(java.io.File xffFile,
Sequence sequence)
throws java.io.IOException,
org.xml.sax.SAXException,
BioException
- Throws:
java.io.IOException
org.xml.sax.SAXException
BioException
readXFF
public static Sequence readXFF(java.io.File xffFile,
java.lang.String seqID,
FiniteAlphabet alpha)
throws java.io.IOException,
org.xml.sax.SAXException,
BioException
- Throws:
java.io.IOException
org.xml.sax.SAXException
BioException
writeXFF
public static void writeXFF(java.io.File xffFile,
FeatureHolder features)
throws java.io.IOException
- Throws:
java.io.IOException
writeXFF
public static void writeXFF(java.io.PrintWriter xffPR,
FeatureHolder features)
throws java.io.IOException
- Throws:
java.io.IOException