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java.lang.Objectorg.biojava.utils.Unchangeable
org.biojava.bio.seq.io.WordTokenization
org.biojava.bio.seq.io.IntegerTokenization
Nested Class Summary |
Nested classes inherited from class org.biojava.bio.seq.io.SymbolTokenization |
SymbolTokenization.TokenType |
Nested classes inherited from class org.biojava.bio.Annotatable |
Annotatable.AnnotationForwarder |
Field Summary |
Fields inherited from interface org.biojava.bio.seq.io.SymbolTokenization |
CHARACTER, FIXEDWIDTH, SEPARATED, UNKNOWN |
Fields inherited from interface org.biojava.bio.Annotatable |
ANNOTATION |
Constructor Summary | |
IntegerTokenization()
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Method Summary | |
Symbol |
parseToken(java.lang.String seq)
Returns the symbol for a single token. |
java.lang.String |
tokenizeSymbol(Symbol sym)
Return a token representing a single symbol. |
Methods inherited from class org.biojava.bio.seq.io.WordTokenization |
getAlphabet, getAnnotation, getTokenType, parseStream, parseString, splitString, tokenizeSymbolList |
Methods inherited from class org.biojava.utils.Unchangeable |
addChangeListener, addChangeListener, addForwarder, getForwarders, getListeners, isUnchanging, removeChangeListener, removeChangeListener, removeForwarder |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.biojava.utils.Changeable |
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Constructor Detail |
public IntegerTokenization()
Method Detail |
public Symbol parseToken(java.lang.String seq) throws IllegalSymbolException
SymbolTokenization
The Symbol will be a member of the alphabet. If the token is not recognized as mapping to a symbol, an exception will be thrown.
seq
- the token to retrieve a Symbol for
IllegalSymbolException
- if there is no Symbol for the tokenpublic java.lang.String tokenizeSymbol(Symbol sym) throws IllegalSymbolException
SymbolTokenization
IllegalSymbolException
- if the symbol isn't recognized.
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