org.biojava.bio.dp
Interfaces
DotState
DPFactory
DPMatrix
EmissionState
MarkovModel
ModelInState
ModelTrainer
ScoreType
State
StatePath
StoppingCriteria
Trainable
TrainingAlgorithm
TransitionTrainer
WeightMatrix
Classes
AbstractTrainer
BackPointer
BaumWelchSampler
BaumWelchTrainer
DP
DP.ReverseIterator
DPFactory.DefaultFactory
MagicalState
MarkovModel.DistributionForwarder
ProfileHMM
ScoreType.NullModel
ScoreType.Odds
ScoreType.Probability
SimpleDotState
SimpleEmissionState
SimpleMarkovModel
SimpleModelInState
SimpleModelTrainer
SimpleStatePath
SimpleWeightMatrix
TrainerTransition
Transition
WeightMatrixAnnotator
WMAsMM
XmlMarkovModel
Exceptions
IllegalTransitionException