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java.lang.Objectorg.biojava.utils.stax.StAXContentHandlerBase
org.biojava.bio.seq.ragbag.RagbagMap
This class is an object that encapsulates all information present in a Map file in a Ragbag directory.
Nested Class Summary | |
class |
RagbagMap.MapElement
class that represents a single mapping in mapFile |
class |
RagbagMap.MapEnum
Enumeration object for RagbagMap. |
Constructor Summary | |
RagbagMap(java.io.File mapFile)
create a RagbagMap from the specified File |
Method Summary | |
void |
endElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
StAXContentHandler delegate)
|
void |
endTree()
|
int |
getDstLength()
|
java.util.Enumeration |
getEnumeration(java.lang.String filename)
|
java.lang.String |
getRef(java.lang.String filename)
gets reference string for a given filename |
void |
parse()
Parse the specified mapping file for this object now. |
void |
startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
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Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase |
characters, endPrefixMapping, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public RagbagMap(java.io.File mapFile)
mapFile
- XML file containing map data.Method Detail |
public void parse() throws java.io.FileNotFoundException, java.io.IOException, org.xml.sax.SAXException
java.io.FileNotFoundException
java.io.IOException
org.xml.sax.SAXException
public java.lang.String getRef(java.lang.String filename)
public java.util.Enumeration getEnumeration(java.lang.String filename)
public int getDstLength()
public void endTree()
endTree
in interface StAXContentHandler
endTree
in class StAXContentHandlerBase
public void startElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs, DelegationManager dm) throws org.xml.sax.SAXException
startElement
in interface StAXContentHandler
startElement
in class StAXContentHandlerBase
org.xml.sax.SAXException
public void endElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler delegate) throws org.xml.sax.SAXException
endElement
in interface StAXContentHandler
endElement
in class StAXContentHandlerBase
org.xml.sax.SAXException
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