org.biojava.bio.proteomics
Class IsoelectricPointCalc
java.lang.Object
org.biojava.bio.proteomics.IsoelectricPointCalc
- public class IsoelectricPointCalc
- extends java.lang.Object
class that computes isoelectric point for proteins
- Since:
- 1.22
- Author:
- David Huen
Method Summary |
double |
getPI(SymbolList peptide,
boolean hasFreeNTerm,
boolean hasFreeCTerm)
Computes isoelectric point of specified peptide. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PK_NH2
public static double PK_NH2
PK_COOH
public static double PK_COOH
IsoelectricPointCalc
public IsoelectricPointCalc()
getPI
public double getPI(SymbolList peptide,
boolean hasFreeNTerm,
boolean hasFreeCTerm)
throws IllegalAlphabetException,
BioException
- Computes isoelectric point of specified peptide.
- Parameters:
peptide
- peptide of which pI is required.hasFreeNTerm
- has free N-terminal amino group.hasFreeCTerm
- has free C-terminal carboxyl group.
- Throws:
IllegalAlphabetException
BioException