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Packages that use SequenceRenderer | |
org.biojava.bio.gui.sequence | Graphical displays of biological sequences and associated annotations. |
Uses of SequenceRenderer in org.biojava.bio.gui.sequence |
Classes in org.biojava.bio.gui.sequence that implement SequenceRenderer | |
class |
AbiTraceRenderer
Renders an ABI trace file as a chromatogram graph. |
class |
AlignmentRenderer
|
class |
BumpedRenderer
|
class |
FeatureBlockSequenceRenderer
FeatureBlockSequenceRenderer forms a bridge between
Sequence rendering and Feature
rendering. |
class |
FilteringRenderer
|
class |
LabelledSequenceRenderer
Renderer which draws a track of sequence with a textual label. |
class |
MultiLineRenderer
MultiLineRenderer is a SequenceRenderer
which collects a number of other SequenceRenderer s
each of which render their own view of a Sequence . |
class |
OverlayRendererWrapper
This class wraps SequenceRenderer classes to present an Overlay Marker interface that will indicate to LayeredRenderer that subsequent renderers should overdraw the same space as the wrapped renderer. |
class |
PaddingRenderer
A renderer that adds padding before and after a delegate renderer. |
class |
RulerRenderer
RulerRenderer renders numerical scales in sequence
coordinates. |
class |
SequenceRendererWrapper
|
class |
SixFrameRenderer
Class that handles drawing in six frames for other classes. |
class |
StopRenderer
Compute sites of stop codons. |
class |
SymbolSequenceRenderer
SymbolSequenceRenderer renders symbols of a
SymbolList . |
Methods in org.biojava.bio.gui.sequence that return SequenceRenderer | |
SequenceRenderer |
TranslatedSequencePanel.getRenderer()
getRenderer returns the current
SequenceRenderer . |
SequenceRenderer |
SequenceRendererWrapper.getRenderer()
|
SequenceRenderer |
OverlayRendererWrapper.getRenderer()
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Methods in org.biojava.bio.gui.sequence with parameters of type SequenceRenderer | |
double |
LineInfo.getDepth(SequenceRenderer r)
|
void |
LineInfo.setDepth(SequenceRenderer r,
double depth)
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void |
TranslatedSequencePanel.setRenderer(SequenceRenderer renderer)
setRenderer sets the current
SequenceRenderer . |
void |
SequencePanel.setRenderer(SequenceRenderer r)
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protected void |
SequencePanel._setRenderer(SequenceRenderer r)
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void |
SequenceRendererWrapper.setRenderer(SequenceRenderer renderer)
|
void |
OverlayRendererWrapper.setRenderer(SequenceRenderer renderer)
|
void |
SequencePoster.setRenderer(SequenceRenderer r)
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protected void |
SequencePoster._setRenderer(SequenceRenderer r)
|
void |
LabelledSequenceRenderer.setRenderer(SequenceRenderer sR)
Set the child renderer responsible for drawing the contents of this track |
void |
MultiLineRenderer.addRenderer(SequenceRenderer renderer)
addRenderer adds a renderer as a new track. |
protected void |
MultiLineRenderer._addRenderer(SequenceRenderer renderer)
|
void |
MultiLineRenderer.removeRenderer(SequenceRenderer renderer)
removeRenderer removes a renderer. |
protected void |
MultiLineRenderer._removeRenderer(SequenceRenderer renderer)
|
Constructors in org.biojava.bio.gui.sequence with parameters of type SequenceRenderer | |
SequenceRenderer.RendererForwarder(SequenceRenderer source,
ChangeSupport cs)
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FilteringRenderer(SequenceRenderer renderer,
FeatureFilter filter,
boolean recurse)
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SequenceRendererWrapper(SequenceRenderer renderer)
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BumpedRenderer(SequenceRenderer renderer)
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BumpedRenderer(SequenceRenderer renderer,
int leading,
int trailing)
|
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PaddingRenderer(SequenceRenderer renderer,
double padding)
Build a new PaddingRenderer that wraps renderer and has
padding depth padding . |
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OverlayRendererWrapper(SequenceRenderer renderer)
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