Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement
org.biojava.bio.alignment Implementation of the Alignment interface. 
 

Uses of AlignmentElement in org.biojava.bio.alignment
 

Classes in org.biojava.bio.alignment that implement AlignmentElement
 class SimpleAlignmentElement
          SimpleSimpleAlignment is a simple implementation of AlignmentElement.
 

Methods in org.biojava.bio.alignment that return AlignmentElement
protected  AlignmentElement FlexibleAlignment.getAE(java.lang.Object label)
           
 

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement
 void ARAlignment.addSequence(AlignmentElement ae)
           
 void FlexibleAlignment.addSequence(AlignmentElement ae)
          add a new a alignment usings a location to the reference sequence.