Uses of Interface
org.biojava.bio.gui.sequence.SequenceRenderer

Packages that use SequenceRenderer
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
 

Uses of SequenceRenderer in org.biojava.bio.gui.sequence
 

Classes in org.biojava.bio.gui.sequence that implement SequenceRenderer
 class AbiTraceRenderer
          Renders an ABI trace file as a chromatogram graph.
 class AlignmentRenderer
           
 class BumpedRenderer
           
 class FeatureBlockSequenceRenderer
          FeatureBlockSequenceRenderer forms a bridge between Sequence rendering and Feature rendering.
 class FilteringRenderer
           
 class LabelledSequenceRenderer
          Renderer which draws a track of sequence with a textual label.
 class MultiLineRenderer
          MultiLineRenderer is a SequenceRenderer which collects a number of other SequenceRenderers each of which render their own view of a Sequence.
 class OverlayRendererWrapper
          This class wraps SequenceRenderer classes to present an Overlay Marker interface that will indicate to LayeredRenderer that subsequent renderers should overdraw the same space as the wrapped renderer.
 class PaddingRenderer
          A renderer that adds padding before and after a delegate renderer.
 class RulerRenderer
          RulerRenderer renders numerical scales in sequence coordinates.
 class SequenceRendererWrapper
           
 class SixFrameRenderer
          Class that handles drawing in six frames for other classes.
 class StopRenderer
          Compute sites of stop codons.
 class SymbolSequenceRenderer
          SymbolSequenceRenderer renders symbols of a SymbolList.
 

Methods in org.biojava.bio.gui.sequence that return SequenceRenderer
 SequenceRenderer TranslatedSequencePanel.getRenderer()
          getRenderer returns the current SequenceRenderer.
 SequenceRenderer SequenceRendererWrapper.getRenderer()
           
 SequenceRenderer OverlayRendererWrapper.getRenderer()
           
 

Methods in org.biojava.bio.gui.sequence with parameters of type SequenceRenderer
 double LineInfo.getDepth(SequenceRenderer r)
           
 void LineInfo.setDepth(SequenceRenderer r, double depth)
           
 void TranslatedSequencePanel.setRenderer(SequenceRenderer renderer)
          setRenderer sets the current SequenceRenderer.
 void SequencePanel.setRenderer(SequenceRenderer r)
           
protected  void SequencePanel._setRenderer(SequenceRenderer r)
           
 void SequenceRendererWrapper.setRenderer(SequenceRenderer renderer)
           
 void OverlayRendererWrapper.setRenderer(SequenceRenderer renderer)
           
 void SequencePoster.setRenderer(SequenceRenderer r)
           
protected  void SequencePoster._setRenderer(SequenceRenderer r)
           
 void LabelledSequenceRenderer.setRenderer(SequenceRenderer sR)
          Set the child renderer responsible for drawing the contents of this track
 void MultiLineRenderer.addRenderer(SequenceRenderer renderer)
          addRenderer adds a renderer as a new track.
protected  void MultiLineRenderer._addRenderer(SequenceRenderer renderer)
           
 void MultiLineRenderer.removeRenderer(SequenceRenderer renderer)
          removeRenderer removes a renderer.
protected  void MultiLineRenderer._removeRenderer(SequenceRenderer renderer)
           
 

Constructors in org.biojava.bio.gui.sequence with parameters of type SequenceRenderer
SequenceRenderer.RendererForwarder(SequenceRenderer source, ChangeSupport cs)
           
FilteringRenderer(SequenceRenderer renderer, FeatureFilter filter, boolean recurse)
           
SequenceRendererWrapper(SequenceRenderer renderer)
           
BumpedRenderer(SequenceRenderer renderer)
           
BumpedRenderer(SequenceRenderer renderer, int leading, int trailing)
           
PaddingRenderer(SequenceRenderer renderer, double padding)
          Build a new PaddingRenderer that wraps renderer and has padding depth padding.
OverlayRendererWrapper(SequenceRenderer renderer)