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java.lang.Objectorg.biojava.bio.seq.io.SequenceBuilderFilter
org.biojava.bio.seq.io.FastaDescriptionLineParser
Simple filter which performs a default extraction of data from the description lines of FASTA files. Behaviour is similar to DefaultDescriptionReader in the old I/O framework.
Nested Class Summary | |
static class |
FastaDescriptionLineParser.Factory
Factory which wraps SequenceBuilders in a FastaDescriptionLineParser |
Constructor Summary | |
FastaDescriptionLineParser(SequenceBuilder delegate)
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Method Summary | |
void |
addSequenceProperty(java.lang.Object key,
java.lang.Object value)
Notify the listener of a sequence-wide property. |
Methods inherited from class org.biojava.bio.seq.io.SequenceBuilderFilter |
addFeatureProperty, addSymbols, endFeature, endSequence, getDelegate, makeSequence, setName, setURI, startFeature, startSequence |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public FastaDescriptionLineParser(SequenceBuilder delegate)
Method Detail |
public void addSequenceProperty(java.lang.Object key, java.lang.Object value) throws ParseException
SeqIOListener
addSequenceProperty
in interface SeqIOListener
addSequenceProperty
in class SequenceBuilderFilter
ParseException
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