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Packages that use DelegationManager | |
org.biojava.bio.program.sax.blastxml | Parsers for the XML output from NCBI blast. |
org.biojava.bio.program.ssbind | Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD. |
org.biojava.bio.program.xff | Event-driven parsing system for the Extensible Feature Format (XFF). |
org.biojava.bio.seq.io.filterxml | Tools for reading and writing an XML representation of BioJava's FeatureFilter language. |
org.biojava.bio.seq.io.game | Event-driven parsing system for the Gene Annotation Markup Elements (GAME). |
org.biojava.bio.seq.io.game12 | Event-driven parsing system for the Gene Annotation Markup Elements (GAME). |
org.biojava.bio.seq.ragbag | The Ragbag package is a set of classes for setting up a virtual sequence contig without the need for writing Biojava code. |
org.biojava.utils.stax | The Stack API for XML (StAX). |
Uses of DelegationManager in org.biojava.bio.program.sax.blastxml |
Methods in org.biojava.bio.program.sax.blastxml with parameters of type DelegationManager | |
void |
BlastXMLParser.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
we override the superclass startElement method so we can determine the the start tag type and use it to set up delegation for the superclass. |
Uses of DelegationManager in org.biojava.bio.program.ssbind |
Methods in org.biojava.bio.program.ssbind with parameters of type DelegationManager | |
void |
SeqSimilarityStAXHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
SeqSimilarityStAXAdapter.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
Uses of DelegationManager in org.biojava.bio.program.xff |
Methods in org.biojava.bio.program.xff with parameters of type DelegationManager | |
void |
FeatureHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
StAX callback for element starts. |
void |
XFFFeatureSetHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
StrandedFeatureHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
LocationHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
PropDetailHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
Uses of DelegationManager in org.biojava.bio.seq.io.filterxml |
Methods in org.biojava.bio.seq.io.filterxml with parameters of type DelegationManager | |
void |
XMLAnnotationTypeHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
Uses of DelegationManager in org.biojava.bio.seq.io.game |
Methods in org.biojava.bio.seq.io.game with parameters of type DelegationManager | |
void |
StAXPropertyHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
Override this to do any processing required but call this prior to returning. |
void |
GAMENamePropHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
SequenceContentHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
GAMETypePropHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
GAMEAspectPropHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
GAMEHandler.startElementHandler(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
GAMEResiduesPropHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
GAMEDescriptionPropHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
StAXFeatureHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
Handles basic entry processing for all feature handlers. |
Uses of DelegationManager in org.biojava.bio.seq.io.game12 |
Methods in org.biojava.bio.seq.io.game12 with parameters of type DelegationManager | |
void |
StAXFeatureHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
Handles basic entry processing for all feature handlers. |
Uses of DelegationManager in org.biojava.bio.seq.ragbag |
Methods in org.biojava.bio.seq.ragbag with parameters of type DelegationManager | |
void |
RagbagMap.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
Uses of DelegationManager in org.biojava.utils.stax |
Methods in org.biojava.utils.stax with parameters of type DelegationManager | |
void |
StAXContentHandler.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
IntElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
ByteElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
StringElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
CharElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
LongElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
StAXContentHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
FloatElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
BooleanElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
void |
DoubleElementHandlerBase.startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs,
DelegationManager dm)
|
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