Uses of Class
org.biojava.bio.program.gff.IgnoreRecordException

Packages that use IgnoreRecordException
org.biojava.bio.program.gff GFF manipulation. 
 

Uses of IgnoreRecordException in org.biojava.bio.program.gff
 

Methods in org.biojava.bio.program.gff that throw IgnoreRecordException
 int GFFErrorHandler.invalidStart(java.lang.String token)
          The `start' field of the GFF entry was not a valid value.
 int GFFErrorHandler.invalidEnd(java.lang.String token)
          The `end' field of the GFF entry was not a valid value.
 double GFFErrorHandler.invalidScore(java.lang.String token)
          The `score' field of the GFF entry was not a valid value.
 int GFFErrorHandler.invalidFrame(java.lang.String token)
          The `frame' field of the GFF entry was not a valid value.
 StrandedFeature.Strand GFFErrorHandler.invalidStrand(java.lang.String token)
          The `strand' field of the GFF entry was not a valid value.
 int GFFErrorHandler.SkipRecordErrorHandler.invalidStart(java.lang.String token)
           
 int GFFErrorHandler.SkipRecordErrorHandler.invalidEnd(java.lang.String token)
           
 double GFFErrorHandler.SkipRecordErrorHandler.invalidScore(java.lang.String token)
           
 int GFFErrorHandler.SkipRecordErrorHandler.invalidFrame(java.lang.String token)
           
 StrandedFeature.Strand GFFErrorHandler.SkipRecordErrorHandler.invalidStrand(java.lang.String token)
           
protected  GFFRecord GFFParser.createRecord(GFFDocumentHandler handler, java.util.List aList, java.lang.String rest, java.lang.String comment)
          Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.