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Hierarchy For Package org.biojava.bio.seq.io
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Class Hierarchy
class java.lang.Object
class org.biojava.bio.seq.io.AbstractGenEmblFileFormer
class org.biojava.bio.seq.io.
EmblFileFormer
(implements org.biojava.bio.seq.io.
SeqFileFormer
)
class org.biojava.bio.seq.io.
GenbankFileFormer
(implements org.biojava.bio.seq.io.
SeqFileFormer
)
class org.biojava.bio.seq.io.
ProteinRefSeqFileFormer
class org.biojava.bio.seq.io.
SwissprotFileFormer
(implements org.biojava.bio.seq.io.
SeqFileFormer
)
class org.biojava.bio.seq.io.
AlignIOConstants
class org.biojava.bio.seq.io.
ChunkedSymbolListBuilder
class org.biojava.bio.seq.io.
ChunkedSymbolListFactory
class org.biojava.bio.seq.io.
EmblLikeFormat
(implements org.biojava.utils.
ParseErrorListener
, org.biojava.utils.
ParseErrorSource
, org.biojava.bio.seq.io.
SequenceFormat
, java.io.Serializable)
class org.biojava.bio.seq.io.
EmblLikeLocationParser
class org.biojava.bio.seq.io.
EmblProcessor.Factory
(implements org.biojava.bio.seq.io.
SequenceBuilderFactory
, java.io.Serializable)
class org.biojava.bio.seq.io.
FastaAlignmentFormat
(implements org.biojava.bio.seq.io.
AlignmentFormat
)
class org.biojava.bio.seq.io.
FastaDescriptionLineParser.Factory
(implements org.biojava.bio.seq.io.
SequenceBuilderFactory
, java.io.Serializable)
class org.biojava.bio.seq.io.
FastaFormat
(implements org.biojava.utils.
ParseErrorListener
, org.biojava.utils.
ParseErrorSource
, org.biojava.bio.seq.io.
SequenceFormat
, java.io.Serializable)
class org.biojava.bio.seq.io.
FeatureTableParser
class org.biojava.bio.seq.io.
GAMEFormat
(implements org.biojava.bio.seq.io.
SequenceFormat
)
class org.biojava.bio.seq.io.
GenbankFormat
(implements org.biojava.utils.
ParseErrorListener
, org.biojava.utils.
ParseErrorSource
, org.biojava.bio.seq.io.
SequenceFormat
, java.io.Serializable)
class org.biojava.bio.seq.io.
GenbankProcessor.Factory
(implements org.biojava.bio.seq.io.
SequenceBuilderFactory
, java.io.Serializable)
class org.biojava.bio.seq.io.
MSFAlignmentFormat
(implements org.biojava.bio.seq.io.
AlignmentFormat
)
class org.biojava.bio.seq.io.
OrganismParser.Factory
(implements org.biojava.bio.seq.io.
SequenceBuilderFactory
, java.io.Serializable)
class org.biojava.bio.seq.io.
ProteinRefSeqProcessor.Factory
(implements org.biojava.bio.seq.io.
SequenceBuilderFactory
, java.io.Serializable)
class org.biojava.bio.seq.io.
SeqAlignReadWrite
class org.biojava.bio.seq.io.
SeqIOAdapter
(implements org.biojava.bio.seq.io.
SeqIOListener
)
class org.biojava.bio.seq.io.
SeqIOConstants
class org.biojava.bio.seq.io.
SeqIOFilter
(implements org.biojava.bio.seq.io.
SeqIOListener
)
class org.biojava.bio.seq.io.
SeqIOTools
class org.biojava.bio.seq.io.
SequenceBuilderBase
(implements org.biojava.bio.seq.io.
SequenceBuilder
)
class org.biojava.bio.seq.io.
SequenceDBSequenceBuilder
class org.biojava.bio.seq.io.
SimpleAssemblyBuilder
class org.biojava.bio.seq.io.
SimpleSequenceBuilder
class org.biojava.bio.seq.io.
SmartSequenceBuilder
class org.biojava.bio.seq.io.
SequenceBuilderFilter
(implements org.biojava.bio.seq.io.
SequenceBuilder
)
class org.biojava.bio.seq.io.
EmblProcessor
(implements org.biojava.utils.
ParseErrorSource
)
class org.biojava.bio.seq.io.
FastaDescriptionLineParser
class org.biojava.bio.seq.io.
GenbankProcessor
(implements org.biojava.utils.
ParseErrorSource
)
class org.biojava.bio.seq.io.
ProteinRefSeqProcessor
class org.biojava.bio.seq.io.
OrganismParser
class org.biojava.bio.seq.io.
SwissprotProcessor
(implements org.biojava.utils.
ParseErrorSource
)
class org.biojava.bio.seq.io.
StreamReader
(implements org.biojava.utils.
ParseErrorListener
, org.biojava.bio.seq.
SequenceIterator
)
class org.biojava.bio.seq.io.
StreamWriter
class org.biojava.bio.seq.io.
SwissprotProcessor.Factory
(implements org.biojava.bio.seq.io.
SequenceBuilderFactory
, java.io.Serializable)
class org.biojava.bio.seq.io.
SymbolListCharSequence
(implements java.lang.CharSequence)
class org.biojava.bio.seq.io.
SymbolTokenization.TokenType
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class org.biojava.utils.
NestedException
class org.biojava.bio.
BioException
class org.biojava.bio.seq.io.
ParseException
class org.biojava.utils.
Unchangeable
(implements org.biojava.utils.
Changeable
)
class org.biojava.bio.seq.io.
CharacterTokenization
(implements java.io.Serializable, org.biojava.bio.seq.io.
SymbolTokenization
)
class org.biojava.bio.seq.io.
WordTokenization
(implements java.io.Serializable, org.biojava.bio.seq.io.
SymbolTokenization
)
class org.biojava.bio.seq.io.
CrossProductTokenization
class org.biojava.bio.seq.io.
DoubleTokenization
class org.biojava.bio.seq.io.
IntegerTokenization
class org.biojava.bio.seq.io.
NameTokenization
Interface Hierarchy
interface org.biojava.bio.seq.io.
AlignmentFormat
interface org.biojava.utils.
Changeable
interface org.biojava.bio.
Annotatable
interface org.biojava.bio.seq.io.
SymbolTokenization
interface org.biojava.bio.seq.io.
SeqIOListener
interface org.biojava.bio.seq.io.
SeqFileFormer
interface org.biojava.bio.seq.io.
SequenceBuilder
interface org.biojava.bio.seq.io.
SequenceBuilderFactory
interface org.biojava.bio.seq.io.
SequenceFormat
interface org.biojava.bio.seq.io.
StreamParser
interface org.biojava.bio.seq.io.
SymbolReader
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