org.biojava.bio.program.ssbind
Class SeqSimilarityStAXAdapter

java.lang.Object
  extended byorg.biojava.utils.stax.StAXContentHandlerBase
      extended byorg.biojava.bio.program.ssbind.SeqSimilarityStAXAdapter
All Implemented Interfaces:
StAXContentHandler

public class SeqSimilarityStAXAdapter
extends StAXContentHandlerBase

SeqSimilarityStAXAdapter is a handler for XML conforming to the BioJava BlastLike DTD. Together with its modular delegate handlers it converts XML into calls on a SearchContentHandler interface. Implementations of the at interface create various types of Java object from the XML data.

Since:
1.3
Author:
Keith James

Field Summary
static java.lang.String NAMESPACE
           
 
Constructor Summary
SeqSimilarityStAXAdapter()
           
 
Method Summary
 void endElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler)
           
 SearchContentHandler getSearchContentHandler()
          getSearchContentHandler gets the handler which will recieve the method calls generated by the adapter.
 void setSearchContentHandler(SearchContentHandler scHandler)
          setSearchContentHandler sets the handler which will recieve the method calls generated by the adapter.
 void startElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs, DelegationManager dm)
           
 
Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

NAMESPACE

public static final java.lang.String NAMESPACE
See Also:
Constant Field Values
Constructor Detail

SeqSimilarityStAXAdapter

public SeqSimilarityStAXAdapter()
Method Detail

startElement

public void startElement(java.lang.String nsURI,
                         java.lang.String localName,
                         java.lang.String qName,
                         org.xml.sax.Attributes attrs,
                         DelegationManager dm)
                  throws org.xml.sax.SAXException
Specified by:
startElement in interface StAXContentHandler
Overrides:
startElement in class StAXContentHandlerBase
Throws:
org.xml.sax.SAXException

endElement

public void endElement(java.lang.String nsURI,
                       java.lang.String localName,
                       java.lang.String qName,
                       StAXContentHandler handler)
                throws org.xml.sax.SAXException
Specified by:
endElement in interface StAXContentHandler
Overrides:
endElement in class StAXContentHandlerBase
Throws:
org.xml.sax.SAXException

getSearchContentHandler

public SearchContentHandler getSearchContentHandler()
getSearchContentHandler gets the handler which will recieve the method calls generated by the adapter.

Returns:
a SearchContentHandler.

setSearchContentHandler

public void setSearchContentHandler(SearchContentHandler scHandler)
setSearchContentHandler sets the handler which will recieve the method calls generated by the adapter.

Parameters:
scHandler - a SearchContentHandler.