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Packages that use GappedSymbolList | |
org.biojava.bio.alignment |
Implementation of the Alignment interface. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of GappedSymbolList in org.biojava.bio.alignment |
Methods in org.biojava.bio.alignment with parameters of type GappedSymbolList | |
void |
FlexibleAlignment.removeGaps(GappedSymbolList seq,
int start,
int length)
because there is a bug in GappedSymbolList |
Uses of GappedSymbolList in org.biojava.bio.seq |
Subinterfaces of GappedSymbolList in org.biojava.bio.seq | |
interface |
GappedSequence
Extension of GappedSymbolList which also projects features into the gapped coordinate system. |
Classes in org.biojava.bio.seq that implement GappedSymbolList | |
class |
SimpleGappedSequence
Simple implementation of GappedSequence. |
Uses of GappedSymbolList in org.biojava.bio.symbol |
Classes in org.biojava.bio.symbol that implement GappedSymbolList | |
class |
SimpleGappedSymbolList
This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps. |
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