Uses of Interface
org.biojava.bio.seq.FeatureRealizer

Packages that use FeatureRealizer
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
 

Uses of FeatureRealizer in org.biojava.bio.seq
 

Classes in org.biojava.bio.seq that implement FeatureRealizer
 class SimpleFeatureRealizer
          FeatureRealizer which uses a lookup table to map template classes to implementations.
 

Constructors in org.biojava.bio.seq with parameters of type FeatureRealizer
ViewSequence(Sequence seq, FeatureRealizer fr)
          Construct a view onto a sequence, using a specific FeatureRealizer
CircularView(Sequence seq, FeatureRealizer fr)
           
SimpleFeatureRealizer(FeatureRealizer fallBack)
           
 

Uses of FeatureRealizer in org.biojava.bio.seq.impl
 

Fields in org.biojava.bio.seq.impl declared as FeatureRealizer
static FeatureRealizer FeatureImpl.DEFAULT
          Default implementation of FeatureRealizer, which wraps simple implementations of Feature and StrandedFeature.
 

Methods in org.biojava.bio.seq.impl that return FeatureRealizer
 FeatureRealizer SimpleSequenceFactory.getFeatureRealizer()
          Returns the FeatureRealizer set by "setFeatureRealizer".
 

Methods in org.biojava.bio.seq.impl with parameters of type FeatureRealizer
 void SimpleSequenceFactory.setFeatureRealizer(FeatureRealizer fr)
          Set the FeatureRealizer used by new sequences created by this factory.
 

Constructors in org.biojava.bio.seq.impl with parameters of type FeatureRealizer
SimpleSequence(SymbolList sym, java.lang.String urn, java.lang.String name, Annotation annotation, FeatureRealizer realizer)
          Create a SimpleSequence using a specified FeatureRealizer.