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See:
Description
Interface Summary | |
RegistryConfiguration | The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases. |
SequenceDBProvider | Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard. |
Class Summary | |
OBDARegistryParser | This class encapsulates all the parsing of the OBDA registry configuration file. |
Registry | Registry is a factory which gets implementations of
the BioJava SequenceDBLite interface. |
RegistryConfiguration.Composite | A RegistryConfiguration that allows you to treat other configurations as providing important or default configuration information. |
RegistryConfiguration.Impl | A simple implementation of RegistryConfiguration backed by a Map. |
SystemRegistry | A registry that loads up the standard biodirectory files. |
Exception Summary | |
ProviderNotFoundException | ProviderNotFoundException is thrown when a sequence
database provider can not be located. |
RegistryException | A RegistryException thrown when the registry cannot
find an implementation of a requested SequenceDB . |
Open Bio Sequence Database Access (OBDA) registry support.
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