org.biojava.bio.search
Interfaces 
SearchBuilder
SearchContentHandler
SeqSimilaritySearcher
SeqSimilaritySearchHit
SeqSimilaritySearchResult
SeqSimilaritySearchSubHit
Classes 
KnuthMorrisPrattSearch
SearchContentAdapter
SearchContentFilter
SeqSimilaritySearchHit.ByScoreComparator
SeqSimilaritySearchHit.BySubHitCountComparator
SeqSimilaritySearchSubHit.ByScoreComparator
SeqSimilaritySearchSubHit.BySubjectStartComparator
SequenceDBSearchHit
SequenceDBSearchResult
SequenceDBSearchSubHit
SimpleSeqSimilaritySearchHit
SimpleSeqSimilaritySearchResult
SimpleSeqSimilaritySearchSubHit