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Packages that use FeatureRealizer | |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
Uses of FeatureRealizer in org.biojava.bio.seq |
Classes in org.biojava.bio.seq that implement FeatureRealizer | |
class |
SimpleFeatureRealizer
FeatureRealizer which uses a lookup table to map template classes to implementations. |
Constructors in org.biojava.bio.seq with parameters of type FeatureRealizer | |
ViewSequence(Sequence seq,
FeatureRealizer fr)
Construct a view onto a sequence, using a specific FeatureRealizer |
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CircularView(Sequence seq,
FeatureRealizer fr)
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SimpleFeatureRealizer(FeatureRealizer fallBack)
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Uses of FeatureRealizer in org.biojava.bio.seq.impl |
Fields in org.biojava.bio.seq.impl declared as FeatureRealizer | |
static FeatureRealizer |
FeatureImpl.DEFAULT
Default implementation of FeatureRealizer, which wraps simple implementations of Feature and StrandedFeature. |
Methods in org.biojava.bio.seq.impl that return FeatureRealizer | |
FeatureRealizer |
SimpleSequenceFactory.getFeatureRealizer()
Returns the FeatureRealizer set by "setFeatureRealizer". |
Methods in org.biojava.bio.seq.impl with parameters of type FeatureRealizer | |
void |
SimpleSequenceFactory.setFeatureRealizer(FeatureRealizer fr)
Set the FeatureRealizer used by new sequences created by this factory. |
Constructors in org.biojava.bio.seq.impl with parameters of type FeatureRealizer | |
SimpleSequence(SymbolList sym,
java.lang.String urn,
java.lang.String name,
Annotation annotation,
FeatureRealizer realizer)
Create a SimpleSequence using a specified FeatureRealizer. |
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