|
|||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
Extension of GappedSymbolList which also projects features into the gapped coordinate system.
Nested Class Summary |
Nested classes inherited from class org.biojava.bio.symbol.SymbolList |
SymbolList.EmptySymbolList |
Nested classes inherited from class org.biojava.bio.seq.FeatureHolder |
FeatureHolder.EmptyFeatureHolder |
Nested classes inherited from class org.biojava.bio.Annotatable |
Annotatable.AnnotationForwarder |
Field Summary |
Fields inherited from interface org.biojava.bio.symbol.SymbolList |
EDIT, EMPTY_LIST |
Fields inherited from interface org.biojava.bio.seq.FeatureHolder |
EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA |
Fields inherited from interface org.biojava.bio.Annotatable |
ANNOTATION |
Methods inherited from interface org.biojava.bio.seq.Sequence |
getName, getURN |
Methods inherited from interface org.biojava.bio.symbol.SymbolList |
edit, getAlphabet, iterator, length, seqString, subList, subStr, symbolAt, toList |
Methods inherited from interface org.biojava.utils.Changeable |
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from interface org.biojava.bio.seq.FeatureHolder |
containsFeature, countFeatures, createFeature, features, filter, filter, getSchema, removeFeature |
Methods inherited from interface org.biojava.bio.Annotatable |
getAnnotation |
Methods inherited from interface org.biojava.bio.symbol.GappedSymbolList |
addGapInSource, addGapInView, addGapsInSource, addGapsInView, firstNonGap, getSourceSymbolList, lastNonGap, removeGap, removeGaps, sourceToView, viewToSource |
|
|||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |