org.biojava.bio.seq.io.agave
Interface AGAVEBioSeqCallbackItf
- All Known Implementing Classes:
- AGAVEBioSeqHandler
- public interface AGAVEBioSeqCallbackItf
An interface that can be tested for by nested handlers
when trying to do a callback.
This one handles callbacks from nested elements that
determine strandedness of a nesting element.
- Author:
- Hanning Ni Doubletwist Inc
reportFeature
public void reportFeature(Location loc)
- Allows nesting class that manages a gene template
to gain information about its extent from nested
elements. Strand is reported separately as
some gene features may not have strand.
reportStrand
public void reportStrand(StrandedFeature.Strand strand)
reportDna
public void reportDna(java.lang.String dna)