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See:
Description
Interface Summary | |
BeadFeatureRenderer | BeadFeatureRenderer s use a 'string of beads'
metaphor for displaying features. |
FeatureLabelRenderer.LabelMaker | |
FeatureRenderer | |
ImageMap | ImageMap represents a collection of image map
hotspots. |
ImageMapRenderer | ImageMapRenderer s create strings representing
Feature s suitable for use in HTML image
maps. |
LabelRenderer | The interface for things that can render labels for a line of information about a sequence. |
OverlayMarker | This is a dummy interface to permit identification of renderers whose output is to be overlaid along the lines of the Marker Interface pattern. |
PairwiseRenderContext | PairwiseRenderContext encapsulates information
required for the rendering of a pair of sequences. |
PairwiseSequenceRenderer | PairwiseSequenceRenderer s render information about the
relationship between two sequences. |
SequenceRenderContext | A context within which sequence information may be rendered. |
SequenceRenderer | The interface for things that can render a line of information about a sequence. |
SequenceViewerListener | |
SequenceViewerMotionListener |
Class Summary | |
AbiTraceRenderer | Renders an ABI trace file as a chromatogram graph. |
AbstractBeadRenderer | AbstractBeadRenderer is a an abstract base class
for the creation of FeatureRenderer s which use a
'string of beads' metaphor for displaying features. |
AlignmentRenderer | |
BasicFeatureRenderer | |
BumpedRenderer | |
CrosshairRenderer |
CrosshairRenderer draws a crosshair, optionally
with coordinates. |
EllipticalBeadRenderer | EllipticalBeadRenderer renders features as simple
ellipses. |
FeatureBlockSequenceRenderer | FeatureBlockSequenceRenderer forms a bridge between
Sequence rendering and Feature
rendering. |
FeatureLabelRenderer | |
FeatureLabelRenderer.AnnotationLabelMaker | |
FeatureLabelRenderer.SourceLabelMaker | |
FeatureLabelRenderer.TypeLabelMaker | |
FilteringRenderer | |
HeadlessRenderContext | A stand-alone SequenceRenderContext to make it easy to render to an image. |
ImageMap.ClientSide | ClientSide represents a client-side style image
map. |
ImageMap.HotSpot | HotSpot s represent an image map hotspot. |
ImageMap.ServerSide | ServerSide represents a server-side style image
map. |
LabelledSequenceRenderer | Renderer which draws a track of sequence with a textual label. |
LabelRenderer.RenderNothing | |
LayeredRenderer | LayeredRenderer handles the lane offsets for
MultiLineRender s. |
LineInfo | Encapsulates the rendering info for a single line of the display. |
MultiLineRenderer | MultiLineRenderer is a SequenceRenderer
which collects a number of other SequenceRenderer s
each of which render their own view of a Sequence . |
OverlayRendererWrapper | This class wraps SequenceRenderer classes to present an Overlay Marker interface that will indicate to LayeredRenderer that subsequent renderers should overdraw the same space as the wrapped renderer. |
PaddingRenderer | A renderer that adds padding before and after a delegate renderer. |
PairwiseDiagonalRenderer | PairwiseDiagonalRenderer renders a region of
similarity between two sequences as a straight line. |
PairwiseFilteringRenderer | PairwiseFilteringRenderer wraps a
PairwiseSequenceRenderer and filters the
PairwiseRenderContext s passed to it. |
PairwiseOverlayRenderer | PairwiseOverlayRenderer allows a list of other
PairwiseSequenceRenderer s to superimpose their
output. |
PairwiseSequencePanel | A PairwiseSequencePanel is a panel that displays a
pair of sequences; one sequence (the primary) may be either
left-to-right (HORIZONTAL) or from top-to-bottom (VERTICAL). |
PairwiseSequenceRenderer.PairwiseRendererForwarder | PairwiseRendererForwarder forward events to other
renderers. |
RectangularBeadRenderer | RectangularBeadRenderer renders features as simple
rectangles. |
RectangularImapRenderer | RectangularImapRenderer is a decorator for
RectangularBeadRenderer which adds the ability to
create HTML image map coordinates which correspond to the feature
rendering produced by the RectangularBeadRenderer . |
RoundRectangularBeadRenderer | RoundRectangularBeadRenderer renders features
as rectangles with rounded corners. |
RulerRenderer | RulerRenderer renders numerical scales in sequence
coordinates. |
SequencePanel | A panel that displays a Sequence. |
SequencePoster | A panel that displays a Sequence. |
SequenceRenderContext.Border | The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence. |
SequenceRenderer.RendererForwarder | |
SequenceRendererWrapper | |
SequenceViewerEvent | An event indicating that a mouse gesture was recognised within a widget that renders sequences. |
SequenceViewerMotionSupport | |
SequenceViewerSupport | |
SimpleLabelRenderer | |
SixFrameRenderer | Class that handles drawing in six frames for other classes. |
SixFrameZiggyRenderer | A feature renderer that computes the data necessary to render multi-exon transcripts without CDS data. |
StackedFeatureRenderer | Allows you to stack multiple feature renderers up (for example a label renderer and a beaded renderer) and have them treated as a single renderer for layout. |
StopRenderer | Compute sites of stop codons. |
SubPairwiseRenderContext | SubPairwiseRenderContext is a rendering context
which wraps a delegate context and effectively hides some of the
delegate's properties with its own. |
SubSequenceRenderContext | |
SymbolSequenceRenderer | SymbolSequenceRenderer renders symbols of a
SymbolList . |
TickFeatureRenderer | |
TranslatedSequencePanel | TranslatedSequencePanel is a panel that displays a
Sequence. |
ZiggyFeatureRenderer | A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags. |
ZiggyImapRenderer | ZiggyImapRenderer is a decorator for
ZiggyFeatureRenderer which adds the ability to create
HTML image map coordinates which correspond to the feature
rendering produced by the ZiggyFeatureRenderer . |
Graphical displays of biological sequences and associated annotations.
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