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java.lang.Objectorg.biojava.utils.AbstractChangeable
org.biojava.bio.seq.db.AbstractSequenceDB
org.biojava.bio.seq.db.SequenceDBWrapper
org.biojava.bio.seq.db.CachingSequenceDB
SequenceDB implementation that caches the results of another SequenceDB.
Nested Class Summary |
Nested classes inherited from class org.biojava.bio.seq.db.SequenceDBWrapper |
SequenceDBWrapper.SequencesForwarder |
Field Summary |
Fields inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
SEQUENCES |
Constructor Summary | |
CachingSequenceDB(SequenceDB parent)
Create a new CachingSequenceDB that caches the sequences in parent. |
Method Summary | |
java.lang.String |
getName()
Get the name of this sequence database. |
Sequence |
getSequence(java.lang.String id)
Retrieve a single sequence by its id. |
java.util.Set |
ids()
Get an immutable set of all of the IDs in the database. |
Methods inherited from class org.biojava.bio.seq.db.SequenceDBWrapper |
getChangeSupport, getParent |
Methods inherited from class org.biojava.bio.seq.db.AbstractSequenceDB |
addSequence, filter, removeSequence, sequenceIterator |
Methods inherited from class org.biojava.utils.AbstractChangeable |
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.biojava.utils.Changeable |
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Constructor Detail |
public CachingSequenceDB(SequenceDB parent)
parent
- the SequenceDB to cacheMethod Detail |
public java.lang.String getName()
SequenceDBLite
public Sequence getSequence(java.lang.String id) throws BioException
SequenceDBLite
BioException
- if there was a failure in retrieving the sequencepublic java.util.Set ids()
SequenceDB
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