|
|||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor
org.biojava.bio.dp.twohead.MatrixPairDPCursor
Field Summary |
Fields inherited from class org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor |
bPointers, columns, depth, eCache, emissions, emptyBP, numStates, pos, seqs, sMatrix, zeroCol |
Constructor Summary | |
MatrixPairDPCursor(SymbolList seq1,
SymbolList seq2,
int depth1,
int depth2,
PairDPMatrix matrix,
EmissionCache eCache)
|
Method Summary | |
boolean |
hasNext()
test wether the cursor can be advanced further |
void |
next(Cell[][] cells)
retrieve the next block of cells |
Methods inherited from class org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor |
getDepth, press |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public MatrixPairDPCursor(SymbolList seq1, SymbolList seq2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache) throws IllegalSymbolException
Method Detail |
public boolean hasNext()
PairDPCursor
public void next(Cell[][] cells)
PairDPCursor
|
|||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |