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Packages that use CodonPref | |
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org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of CodonPref in org.biojava.bio.symbol |
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Classes in org.biojava.bio.symbol that implement CodonPref | |
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class |
SimpleCodonPref
a simple no-frills implementation of the CodonPref object that encapsulates codon preference data. |
Methods in org.biojava.bio.symbol that return CodonPref | |
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CodonPref |
CodonPrefFilter.ByName.getCodonPref()
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static CodonPref |
CodonPrefTools.getCodonPreference(String id)
get the specified codon preference. |
static CodonPref[] |
CodonPrefTools.readFromXML(InputStream prefStream)
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static CodonPref |
CodonPrefTools.readFromXML(InputStream prefStream,
String name)
reads a specified CodonPref from an file. |
Methods in org.biojava.bio.symbol with parameters of type CodonPref | |
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void |
CodonPrefFilter.put(CodonPref codonPref)
handles storage of a CodonPref object |
void |
CodonPrefFilter.AcceptAll.put(CodonPref codonPref)
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void |
CodonPrefFilter.ByName.put(CodonPref codonPref)
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void |
CodonPrefFilter.EverythingToXML.put(CodonPref codonPref)
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static void |
CodonPrefTools.writeToXML(CodonPref codonPref,
PrintWriter writer)
write out a specified CodonPref object in XML format. |
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