symbol
Class WindowCount

java.lang.Object
  extended by symbol.WindowCount

public class WindowCount
extends Object

Title: WindowCount Description: A program to find the distribution of nmers in a fasta library Copyright: Copyright (c) 2001 Company: AgResearch

Version:
1.0
Author:
Mark Schreiber, Matthew Pocock

Constructor Summary
WindowCount()
           
 
Method Summary
static void main(String[] args)
           
static void output(Double d, org.biojava.bio.symbol.AtomicSymbol s)
           
static org.biojava.bio.seq.db.SequenceDB readSequenceDB(File seqFile, org.biojava.bio.symbol.Alphabet alpha)
          Create a sequence database from a fasta file.
static void usage()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

WindowCount

public WindowCount()
Method Detail

main

public static void main(String[] args)

readSequenceDB

public static org.biojava.bio.seq.db.SequenceDB readSequenceDB(File seqFile,
                                                               org.biojava.bio.symbol.Alphabet alpha)
                                                        throws Exception
Create a sequence database from a fasta file.

Throws:
Exception

output

public static void output(Double d,
                          org.biojava.bio.symbol.AtomicSymbol s)

usage

public static void usage()