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See:
Description
Class Summary | |
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AlignmentGui | A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload. |
BiojavaJmol | A class that provides a simple GUI for Jmol |
JMatrixPanel | a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment |
RasmolCommandListener | a utility class that listens to Ramsol script commands in the @link BiojavaJmol class |
ScaleableMatrixPanel | A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm. |
SequenceDisplay | A sequence display that can show the results of a protein structure alignment. |
A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui.
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