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Packages that use GFFRecordFilter | |
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org.biojava.bio.program.gff | GFF manipulation. |
Uses of GFFRecordFilter in org.biojava.bio.program.gff |
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Classes in org.biojava.bio.program.gff that implement GFFRecordFilter | |
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static class |
GFFRecordFilter.AcceptAll
Implementation of GFFRecordFilter that accepts everything. |
static class |
GFFRecordFilter.FeatureFilter
Implementation of GFFRecordFilter that accepts records based upon the feature field. |
static class |
GFFRecordFilter.FrameFilter
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static class |
GFFRecordFilter.NotFilter
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static class |
GFFRecordFilter.SequenceFilter
Implementation of GFFRecordFilter that accepts records based upon the sequence name. |
static class |
GFFRecordFilter.SourceFilter
Implementation of GFFRecordFilter that accepts records based upon the source field. |
static class |
GFFRecordFilter.StrandFilter
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Fields in org.biojava.bio.program.gff declared as GFFRecordFilter | |
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static GFFRecordFilter |
GFFRecordFilter.ACCEPT_ALL
A GFFRecordFilter that accepts everything. |
Methods in org.biojava.bio.program.gff that return GFFRecordFilter | |
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GFFRecordFilter |
GFFRecordFilter.NotFilter.getFilter()
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Methods in org.biojava.bio.program.gff with parameters of type GFFRecordFilter | |
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GFFEntrySet |
GFFEntrySet.filter(GFFRecordFilter filter)
Filter this entry set into another set. |
static GFFEntrySet |
GFFTools.readGFF(BufferedReader gffIn,
GFFRecordFilter recFilt)
Read all GFF entries matching a filter from a buffered reader. |
static GFFEntrySet |
GFFTools.readGFF(File inFile,
GFFRecordFilter recFilt)
Reads a GFFEntrySet from a file with the specified filter. |
static GFFEntrySet |
GFFTools.readGFF(String fileName,
GFFRecordFilter recFilt)
Deprecated. use: readGff(File,GFFRecordFilter) |
void |
GFFRecordFilter.NotFilter.setFilter(GFFRecordFilter filter)
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Constructors in org.biojava.bio.program.gff with parameters of type GFFRecordFilter | |
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GFFFilterer(GFFDocumentHandler handler,
GFFRecordFilter filter)
Create a new GFFFilterer that will forward to handler everything that filter accepts. |
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GFFRecordFilter.NotFilter(GFFRecordFilter filter)
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