Uses of Interface
org.biojava.bio.seq.db.SequenceDBInstallation

Packages that use SequenceDBInstallation
org.biojava.bio.program.ssbind Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD. 
org.biojava.bio.seq.db Collections of biological sequence data. 
 

Uses of SequenceDBInstallation in org.biojava.bio.program.ssbind
 

Fields in org.biojava.bio.program.ssbind declared as SequenceDBInstallation
protected  SequenceDBInstallation ViewSequenceFactory.subjectDBs
           
 

Methods in org.biojava.bio.program.ssbind that return SequenceDBInstallation
 SequenceDBInstallation ViewSequenceFactory.getSubjectDBInstallation()
          getSubjectDBInstallation returns the installation in which all the databases searched may be found.
 

Methods in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallation
 void ViewSequenceFactory.setSubjectDBInstallation(SequenceDBInstallation subjectDBs)
          setSubjectDBInstallation sets the subject database holder to a specific installation.
 void BlastLikeSearchBuilder.setSubjectDBInstallation(SequenceDBInstallation subjectDBs)
          setSubjectDBInstallation sets the subject database holder to a specific installation.
 

Constructors in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallation
BlastLikeSearchBuilder(List target, SequenceDB querySeqHolder, SequenceDBInstallation subjectDBs)
          Creates a new BlastLikeSearchBuilder which will instantiate results into the List target.
 

Uses of SequenceDBInstallation in org.biojava.bio.seq.db
 

Classes in org.biojava.bio.seq.db that implement SequenceDBInstallation
 class DummySequenceDBInstallation
          DummySequenceDBInstallation is an implementation which returns the same DummySequenceDB instance regardless of the identifier used to retrieve a database.
 class SimpleSequenceDBInstallation
          This class is an implementation of interface SequenceDBInstallation that manages a set of SequenceDB objects.